Update to 3.8

.Rbuildignore

@@ -1,6 +1,5 @@
 ^.*\.Rproj$
 ^\.Rproj\.user$
-.Rhistory
-.travis.yml
-.git
-appveyor.yml
+\.Rhistory
+\.git
+local

.gitignore

@@ -1,6 +1,7 @@
 .Rproj.user
 .Rhistory
 .RData
+src/*.rds
 src/*.o
 src/*.so
 src/*.dll

DESCRIPTION

@@ -1,46 +1,35 @@
 Package: RcppBlaze
 Type: Package
 Title: 'Rcpp' Integration for the 'Blaze' High-Performance C++ Math Library
-Version: 0.2.2
-Date: 2017-10-08
+Version: 1.0.0
+Date: 2024-04-27
 Author: Ching-Chuan Chen, Klaus Iglberger, Georg Hager, Christian Godenschwager,
     Tobias Scharpff, Dirk Eddelbuettel, Romain Francois, Douglas Bates
 Maintainer: Ching-Chuan Chen <zw12356@gmail.com>
 URL: https://github.com/Chingchuan-chen/RcppBlaze,
     https://bitbucket.org/blaze-lib/blaze
 BugReports: https://github.com/Chingchuan-chen/RcppBlaze/issues
-Description: 'Blaze' is an open-source, high-performance C++ math library
-    for dense and sparse arithmetic. With its state-of-the-art Smart Expression
-    Template implementation 'Blaze' combines the elegance and ease of use of a
-    domain-specific language with 'HPC'-grade performance, making it one of the most
-    intuitive and fastest C++ math libraries available. The 'Blaze' library offers:
-    - high performance through the integration of 'BLAS' libraries and manually
-    tuned 'HPC' math kernels - vectorization by 'SSE', 'SSE2', 'SSE3', 'SSSE3', 'SSE4', 
-    'AVX', 'AVX2', 'AVX-512', 'FMA', and 'SVML' - parallel execution by 'OpenMP', C++11 
-    threads and 'Boost' threads ('Boost' threads are disabled in 'RcppBlaze') - the 
-    intuitive and easy to use API of a domain specific language - unified arithmetic 
-    with dense and sparse vectors and matrices - thoroughly tested matrix and vector 
-    arithmetic - completely portable, high quality C++ source code. The 'RcppBlaze' 
-    package includes the header files from the 'Blaze' library with disabling some 
-    functionalities related to link to the thread and system libraries which make 
-    'RcppBlaze' be a header-only library. Therefore, users do not need to install 
-    'Blaze' and the dependency 'Boost'. 'Blaze' is licensed under the New (Revised) 
-    BSD license, while 'RcppBlaze' (the 'Rcpp' bindings/bridge to 'Blaze') is licensed 
-    under the GNU GPL version 2 or later, as is the rest of 'Rcpp'. Note that since 
-    'Blaze' has committed to 'C++14' commit to 'C++14' which does not used by most R users
-    from version 3.0, we will use the version 2.6 of 'Blaze' which is 'C++98' compatible 
-    to support the most compilers and system.
+Description: Blaze is an open-source, high-performance C++ math library for dense and sparse arithmetic. 
+    With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and 
+    ease of use of a domain-specific language with HPC-grade performance, making it one of the most 
+    intuitive and fastest C++ math libraries available. The 'RcppBlaze' package includes the header files 
+    from the 'Blaze' library with disabling some functionalities related to link to the thread and system
+    libraries which make 'RcppBlaze' be a header-only library. Therefore, users do not need to install 
+    'Blaze'.
 Depends:
-    R (>= 3.0.2)
+    R (>= 4.2.0)
 Imports:
     utils,
-    Rcpp (>= 0.11.0),
-    Matrix (>= 1.1-0)
-LinkingTo: Rcpp,
-    BH (>= 1.54.0-2)
+    Rcpp (>= 1.0.0),
+    Matrix (>= 1.5-0)
+LinkingTo:
+    Rcpp
 Suggests:
-    RUnit,
+    MatrixExtra,
+    microbenchmark,
+    tinytest,
     pkgKitten
-LazyData: yes
-License: GPL (>= 2)
-RoxygenNote: 6.0.1
+LazyLoad: yes
+Encoding: UTF-8
+License: BSD_3_clause + file LICENSE
+RoxygenNote: 7.3.1

LICENSE

@@ -0,0 +1,2 @@
+YEAR: 2011-2024
+COPYRIGHT HOLDER: Ching-Chuan Chen

NAMESPACE

@@ -7,7 +7,6 @@ importClassesFrom(Matrix,dgRMatrix)
 importClassesFrom(Matrix,lgCMatrix)
 importClassesFrom(Matrix,lgRMatrix)
 importFrom(Rcpp,Rcpp.plugin.maker)
-importFrom(Rcpp,evalCpp)
 importFrom(utils,package.skeleton)
 importFrom(utils,packageDescription)
 useDynLib(RcppBlaze, .registration = TRUE)

NEWS.md

@@ -1,3 +1,10 @@
+# RcppBlaze v1.0.0
+
+* Update Blaze-lib to 3.8.2 since Rcpp supports C++14 / C++17 since 4.2.0.
+* Because of the support of C++14, R need to be >= `4.2.0` to install `RcppBlaze`.
+* Enable C++11 Threads when compiling `fastLm`.
+* Change to use BSD License which is aligned with `blize-lib`.
+
 # RcppBlaze v0.2.2
 
 * Fix building problem on windows.

R/RcppBlaze-package.R

@@ -3,99 +3,67 @@
 #' RcppBlaze construct a bridge between R and Blaze.
 #'
 #' 'Blaze' is an open-source, high-performance C++ math library for dense and sparse arithmetic.
-## Copyright (C) 2010 - 2013 Dirk Eddelbuettel, Romain Francois and Douglas Bates
-## Copyright (C) 2014        Dirk Eddelbuettel
-## Copyright (C) 2017        Chingchuan Chen
+## Copyright (C) 2010 - 2024 Dirk Eddelbuettel, Romain Francois and Douglas Bates
+## Copyright (C) 2017 - 2024 Ching-Chuan Chen
 ##
-## This file is based on RcppEigen-package.Rd and RcppArmadillo-package.Rd
-## from RcppArmadillo and RcppEigen.
+## This file is based on files from RcppArmadillo.
 ## This file is part of RcppBlaze.
 ##
 ## RcppBlaze is free software: you can redistribute it and/or modify it
-## under the terms of the GNU General Public License as published by
-## the Free Software Foundation, either version 2 of the License, or
-## (at your option) any later version.
-##
-## RcppBlaze is distributed in the hope that it will be useful, but
-## WITHOUT ANY WARRANTY; without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-## GNU General Public License for more details.
-##
-## You should have received a copy of the GNU General Public License
-## along with RcppBlaze  If not, see <http://www.gnu.org/licenses/>.
+## under the terms of the 3-Clause BSD License. You should have received
+## a copy of 3-Clause BSD License along with RcppBlaze.
+## If not, see https://opensource.org/license/BSD-3-Clause.
 
 #' With its state-of-the-art Smart Expression Template implementation \strong{Blaze} combines the elegance and
 #' ease of use of a domain-specific language with HPC-grade performance, making it one of the most
-#' intuitive and fastest C++ math libraries available. The \strong{Blaze} library offers:
-#' \itemize{
-#'   \item high performance through the integration of BLAS libraries and manually tuned HPC math kernels
-#'   \item vectorization by SSE, SSE2, SSE3, SSSE3, SSE4, AVX, AVX2, AVX-512, FMA, and SVML
-#'   \item parallel execution by OpenMP, C++11 threads and \strong{Boost} threads
-#'      (\strong{Boost} threads is disables in \strong{RcppBlaze})
-#'   \item the intuitive and easy to use API of a domain specific language
-#'   \item unified arithmetic with dense and sparse vectors and matrices
-#'   \item thoroughly tested matrix and vector arithmetic
-#'   \item completely portable, high quality C++ source code
-#' }
-#'
-#' The \strong{RcppBlaze} package includes the header files from the \strong{Blaze} library with disabling some
-#' functionalities related to link to the thread and system libraries which make \strong{RcppBlaze} be a
-#' header-only library. Therefore, users do not need to  install \strong{Blaze} and the dependency \strong{Boost}.
-#' \strong{Blaze} is licensed under the New (Revised) BSD license, while \strong{RcppBlaze}
-#' (the \strong{Rcpp} bindings/bridge to \strong{Blaze}) is licensed under the GNU GPL version 2 or later,
-#' as is the rest of \strong{Rcpp}.
-#'
-#' Note that since \strong{Blaze} has committed to C++14 which does not used by most \strong{R} users from version 3.0,
-#' we will use the version 2.6 of \strong{Blaze} which is C++98 compatible to support the most compilers and system.
-#'
-#' @section Caution:
-#' On the windows x64 with \strong{Rtools33}, \strong{Rtools34}, \code{std::ptrdiff_s} is defined as \code{long long unsigned int},
-#' so do not direct wrap the dimention of matrix or the size of vector to output in case the compiling error occurs.
+#' intuitive and fastest C++ math libraries available. The \strong{RcppBlaze} package includes the header files
+#' from the \strong{Blaze} library with disabling some functionalities related to link to the thread and system
+#' libraries which make \strong{RcppBlaze} be a header-only library. Therefore, users do not need to  install
+#' \strong{Blaze}.
 #'
 #' @section Using RcppBlaze:
 #' The simplest way to get started is to create a skeleton of a package
 #' using \code{RcppBlaze}. This can be done conveniently by the
-#' \code{\link{RcppBlaze.package.skeleton}}
-#' function.
+#' \code{\link{RcppBlaze.package.skeleton}} function.
 #'
 #' The important steps are
 #' \enumerate{
 #' \item Include the \samp{RcppBlaze.h} header file, which also includes \samp{blaze/Blaze.h}.
-#' \item Import \code{Rcpp}, LinkingTo \code{Rcpp}, \code{BH} and \code{RcppBlaze} by adding these lines to the \samp{DESCRIPTION} file:
+#' \item Import \code{Rcpp}, LinkingTo \code{Rcpp} and \code{RcppBlaze} by adding these lines to the \samp{DESCRIPTION} file:
 #' \preformatted{
-#'   Imports: Rcpp (>= 0.11.0)
-#'   LinkingTo: Rcpp, BH, RcppBlaze
+#'   Imports: Rcpp (>= 1.0.0)
+#'   LinkingTo: Rcpp, RcppBlaze
 #' }
-#' \item Link against the \code{BLAS} and \code{LAPACK} libraries, by adding following two lines in the \samp{Makevars} and
-#' \samp{Makevars.win} files:
+#' \item Link against the \code{BLAS} and \code{LAPACK} libraries, by adding following two lines in the \samp{Makevars} and \samp{Makevars.win} files:
 #' \preformatted{
 #'   PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)
 #' }
 #' }
 #'
+#' Note that if you would like to enable Boost threads support, you need to import \strong{BH} package in your DESCRIPTION.
+#' Note that \code{CompressedVector} and \code{CompressedMatrix} only support \code{int}, \code{float} and \code{double} types.
+#'
 #' @author
-#' For RcppBlaze: Chingchuan Chen
-#' Maintainer: Chingchuan Chen <zw12356@gmail.com>
+#' For RcppBlaze: Ching-Chuan Chen
+#' Maintainer: Ching-Chuan Chen <zw12356@gmail.com>
 #' For blaze: Klaus Iglberger, Georg Hager, Christian Godenschwager, Tobias Scharpff
 #'
 #' @references
 #' \enumerate{
 #' \item Blaze project: \url{https://bitbucket.org/blaze-lib/blaze}
 #' \item K. Iglberger, G. Hager, J. Treibig, and U. Ruede:
-#'       \href{http://epubs.siam.org/sisc/resource/1/sjoce3/v34/i2/pC42_s1}{
+#'       \href{https://doi.org/10.1137/110830125}{
 #'         Expression Templates Revisited: A Performance Analysis of Current Methodologies.}
 #'       SIAM Journal on Scientific Computing, 34(2): C42--C69, 2012
 #' \item K. Iglberger, G. Hager, J. Treibig, and U. Ruede:
-#'       \href{http://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=06266939}{
+#'       \href{https://doi.org/10.1109/HPCSim.2012.6266939}{
 #'       High Performance Smart Expression Template Math Libraries.}
 #'       Proceedings of the 2nd International Workshop on New Algorithms and Programming Models
 #'       for the Manycore Era (APMM 2012) at HPCS 2012
 #' }
 #'
 #' @keywords package interface
-#' @docType package
 #' @name RcppBlaze-package
 #' @useDynLib RcppBlaze, .registration = TRUE
-#' @importFrom Rcpp evalCpp
 #' @importClassesFrom Matrix dgCMatrix lgCMatrix dgRMatrix lgRMatrix
-NULL
+"_PACKAGE"