Update README.md #83
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| name: CI | |
| on: [push, pull_request] | |
| jobs: | |
| run: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.7', '3.8', '3.9', '3.10'] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Mamba with Python ${{ matrix.python-version }} | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: test | |
| create-args: >- | |
| -c bioconda | |
| python=${{ matrix.python-version }} | |
| seaborn | |
| biopython | |
| repeatmasker | |
| coverage | |
| pathos | |
| pyfaidx | |
| vcfpy | |
| statsmodels | |
| cache-environment: true | |
| cache-downloads: false | |
| - name: Run Test | |
| run: micromamba activate test && coverage run --source=./gdbr --omit=./test/* -m unittest discover test && coverage xml | |
| shell: bash -el {0} | |
| - name: Upload Coverage to Codecov | |
| uses: codecov/codecov-action@v3 |