Fix bug #89
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: [push, pull_request] | |
| jobs: | |
| run: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.7', '3.8', '3.9', '3.10'] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Mamba with Python ${{ matrix.python-version }} | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: test | |
| create-args: >- | |
| -c bioconda | |
| python=${{ matrix.python-version }} | |
| seaborn | |
| biopython | |
| repeatmasker | |
| coverage | |
| pathos | |
| pyfaidx | |
| vcfpy | |
| statsmodels | |
| cache-environment: true | |
| cache-downloads: false | |
| - name: Run Test | |
| run: micromamba activate test && coverage run --source=./gdbr --omit=./test/* -m unittest discover test && coverage xml | |
| shell: bash -el {0} | |
| - name: Upload Coverage to Codecov | |
| uses: codecov/codecov-action@v3 |