Deploy to shinyapps.io #20
Workflow file for this run
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| name: Deploy to shinyapps.io | |
| on: | |
| # run on any tagged push | |
| release: | |
| types: [published] | |
| # run on request (via button in actions menu) | |
| workflow_dispatch: | |
| inputs: | |
| deploy_type: | |
| description: Deploy to release or test | |
| required: true | |
| options: | |
| - 'test' | |
| - 'release' | |
| default: 'test' | |
| jobs: | |
| deploy: | |
| name: Deploy to shinyapps | |
| # allow skipping deployment for commits containing '[automated]' or '[no-deploy]' in the commit message | |
| if: "!contains(github.event.head_commit.message, '[automated]') && !contains(github.event.head_commit.message, '[no-deploy]')" | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Set deployment type | |
| run: | | |
| # Check if not triggered from worflow-dispatch (event input variable is empty) | |
| if [ -z "${{github.event.inputs.deploy_type}}" ]; then | |
| # Set deployment type to release as was not triggered by workflow_dispatch | |
| DEPLOY_TYPE="release" | |
| else | |
| # Set deployment type to workflow_dispatch event input variable | |
| DEPLOY_TYPE=${{github.event.inputs.deploy_type}} | |
| fi | |
| # Store the appName in environment variables based on deployment type | |
| if [[ $DEPLOY_TYPE = "test" ]]; then | |
| echo "appName=MetaInsight_test" >> $GITHUB_ENV | |
| else | |
| echo "appName=MetaInsight" >> $GITHUB_ENV | |
| fi | |
| - name: Print deployment type | |
| run: | | |
| echo "Deploying to: $appName" | |
| - name: Install package system dependencies | |
| run: | | |
| sudo apt install libcurl4-openssl-dev jags libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev libglpk-dev libmagick++-dev -y | |
| # Checkout the repo | |
| - uses: actions/checkout@v4 | |
| # Setup R (4.3.0) | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: '4.3.2' | |
| # Capture dependencies | |
| - name: Capture dependencies | |
| run: | | |
| # Install packages | |
| source("global.R") | |
| # Create lockfile | |
| install.packages("renv") | |
| renv::snapshot() | |
| shell: Rscript {0} | |
| env: | |
| GITHUB_PAT: ${{ secrets.PAT }} | |
| # Setup and install dependencies using renv | |
| - uses: r-lib/actions/setup-renv@v2 | |
| # Deploy using rsconnect | |
| - name: Deploy | |
| run: | | |
| # Install rsconnect | |
| install.packages("rsconnect") | |
| # Set up account | |
| cat("Checking account info...") | |
| rsconnect::setAccountInfo( | |
| Sys.getenv("accountName"), | |
| Sys.getenv("accountToken"), | |
| Sys.getenv("accountSecret") | |
| ) | |
| cat(" [OK]\n") | |
| cat(paste0("Deploying ", Sys.getenv("appName"), "\n")) | |
| # Deploy application | |
| rsconnect::deployApp( | |
| appName = Sys.getenv("appName"), | |
| account = Sys.getenv("accountName"), | |
| forceUpdate = TRUE | |
| ) | |
| shell: Rscript {0} | |
| env: | |
| accountName: crsu | |
| # token and secret obtained from https://www.shinyapps.io/admin/#/tokens | |
| accountToken: ${{ secrets.SHINYAPPS_TOKEN }} | |
| accountSecret: ${{ secrets.SHINYAPPS_SECRET }} |