add convert data to epiweekly to test mode script

pipelines/tests/test_run.sh

@@ -14,22 +14,32 @@ N_AHEAD=$3
 # Iterate over each subdirectory in the base directory
 echo "TEST-MODE: Running loop over subdirectories in $BASE_DIR"
 echo "For $N_SAMPLES samples on 1 chain, and $N_AHEAD forecast points"
+echo ""
 for SUBDIR in "$BASE_DIR"/*/; do
     echo "TEST-MODE: Inference for $SUBDIR"
     python fit_model.py "$SUBDIR" --n-chains 1 --n-samples $N_SAMPLES
     echo "TEST-MODE: Finished inference"
+    echo ""
     echo "TEST-MODE: Generating posterior predictions for $SUBDIR"
     python generate_predictive.py "$SUBDIR" --n-forecast-points $N_AHEAD
     echo "TEST-MODE: Finished generating posterior predictions"
+    echo ""
     echo "TEST-MODE: Converting inferencedata to parquet for $SUBDIR"
     Rscript convert_inferencedata_to_parquet.R "$SUBDIR"
     echo "TEST-MODE: Finished converting inferencedata to parquet"
+    echo ""
+    echo "TEST-MODE: Generate epiweekly data for $SUBDIR"
+    Rscript generate_epiweekly.R "$SUBDIR"
+    echo "TEST-MODE: Finished generating epiweekly data"
+    echo ""
     echo "TEST-MODE: Forecasting baseline models for $SUBDIR"
     Rscript timeseries_forecasts.R "$SUBDIR" --n-forecast-days $N_AHEAD --n-samples $N_SAMPLES
     echo "TEST-MODE: Finished forecasting baseline models"
+    echo ""
     echo "TEST-MODE: Postprocessing state forecast for $SUBDIR"
     Rscript postprocess_state_forecast.R "$SUBDIR"
     echo "TEST-MODE: Finished postprocessing state forecast"
+    echo ""
     echo "TEST-MODE: Scoring forecast for $SUBDIR"
     Rscript score_forecast.R "$SUBDIR"
     echo "TEST-MODE: Finished scoring forecast"