Script for trVAE

[marinaEM]

Contribution Guidelines

1. Initial Setup

   • Clone the repository: git clone <repository_url>

2. Update Local Content

   • Ensure you’re up to date with the development branch:

     git checkout devel
     git pull origin devel

3. Create a New Branch

   • Create a descriptive branch for your work:

     git checkout -b <branch_name>

4. Commit & Push Changes

   • Stage and commit your changes with clear messages:

     git add <file_name>
     git commit -m "Brief description of changes"

   • Push to GitHub:

     git push origin <branch_name>

5. Create a Pull Request

   • Target the devel branch for merging.
   • Follow the PR template, review, and submit.

6. Final Merge & Update

   • Once approved, merge your PR and delete your branch if desired.
   • Update your local repository:

     git checkout devel
     git pull origin devel

By following these steps, you contribute effectively and collaboratively.

Task: Implement script for trVAE

• Description: Develop a script or set of scripts to run trVAE. Identify required inputs and expected outputs. These scripts should ensure compatibility with Nextflow modules.
• Input: Dataset data, metadata, and specified perturbation task
• Output: Prediction results from trVAE

Tags: #python, #GenerativeAI