Merge pull request #17 from BU-Spark/extracting-reference-data

Fixed error with percentage plots. New pcorrect lotss created

Extracting reference data (Isolation forest).ipynb

@@ -116,6 +116,8 @@
     "    df = df.drop([\"Date_of_observation\", \"Observation_ID\", \"User_id\", \"User_Tree_id\", \"Species_id\", \"State_name\", \"Species_name\", \"Year\"], axis=1)\n",
     "    df = df.reset_index(drop=True)\n",
     "    \n",
+    "    \n",
+    "    \n",
     "    model = IsolationForest(n_estimators = num_trees, verbose = 1, contamination = contamination, \n",
     "                            bootstrap = bootstrap, random_state = 42)\n",
     "    \n",
@@ -222,24 +224,24 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 63,
+   "execution_count": 69,
    "id": "1db2ebf4",
    "metadata": {},
    "outputs": [
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "Mango (all varieties)-Mangifera indica finished in 51.597217082977295 seconds\n",
-      "Jackfruit-Artocarpus heterophyllus finished in 50.52530598640442 seconds\n",
-      "Coconut palm-Cocos nucifera finished in 50.82300519943237 seconds\n",
-      "Tamarind-Tamarindus indica finished in 48.73090410232544 seconds\n",
-      "Indian Laburnum-Cassia fistula finished in 48.14261507987976 seconds\n",
-      "Amla-Phyllanthus emblica finished in 49.97675395011902 seconds\n",
-      "Jamun-Syzygium cumini finished in 89.29073786735535 seconds\n",
-      "Neem-Azadirachta indica finished in 98.57835698127747 seconds\n",
-      "Maulsari-Mimusops elengi finished in 46.72803974151611 seconds\n",
-      "Rain tree-Albizia saman finished in 46.731587171554565 seconds\n"
+      "Mango (all varieties)-Mangifera indica finished in 48.85904312133789 seconds\n",
+      "Jackfruit-Artocarpus heterophyllus finished in 47.873674154281616 seconds\n",
+      "Coconut palm-Cocos nucifera finished in 49.44746208190918 seconds\n",
+      "Tamarind-Tamarindus indica finished in 47.319135904312134 seconds\n",
+      "Indian Laburnum-Cassia fistula finished in 46.6449191570282 seconds\n",
+      "Amla-Phyllanthus emblica finished in 43.792783975601196 seconds\n",
+      "Jamun-Syzygium cumini finished in 44.868854999542236 seconds\n",
+      "Neem-Azadirachta indica finished in 45.04347014427185 seconds\n",
+      "Maulsari-Mimusops elengi finished in 43.54406809806824 seconds\n",
+      "Rain tree-Albizia saman finished in 43.959153175354004 seconds\n"
      ]
     }
    ],
@@ -264,7 +266,7 @@
     "        for phenophase in phenophases:\n",
     "            ref_x = species_ref_df['Week']\n",
     "            ref_y = species_ref_df[phenophase]\n",
-    "            cit_pcts = create_percentage_plots('kerala', 'Mango (all varieties)-Mangifera indica', 2023, phenophase)\n",
+    "            cit_pcts = create_percentage_plots('kerala', species, 2023, phenophase)\n",
     "            cit_x = list(cit_pcts.keys())\n",
     "            cit_y = list(cit_pcts.values())\n",
     "            \n",