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Hi,
I tried to install Crispr_DART tool and its related dependency programs. I also downloaded separately GATK-v3.8-0-ge9d806836 and extracted the zip folder after which i got only GenomeAnalysisTK.jar file inside the folder. Next, I gave path for java and gatk in settings.yaml file along with all input files location as well as output directory. Finally when I tried to execute the program. It did not output any result files in the output gatk subfolder created inside the parent output folder Crispr_DART. When I checked the log files generated for gatk step, it was showing following error.
ERROR StatusLogger Unable to create class org.apache.logging.log4j.core.impl.Log4jContextFactory specified in jar:file:/data/ngs/programs/crispr_DART/tool_gatk_3.8/GenomeAnalysisTK-3.8-0-ge9d806836/GenomeAnalysisTK.jar!/META-INF/log4j-provider.properties
ERROR StatusLogger Log4j2 could not find a logging implementation. Please add log4j-core to the classpath. Using SimpleLogger to log to the console...
Please help me to resolve the issue and generate complete result files.
Thanks
Nihar
The text was updated successfully, but these errors were encountered:
Hi,
I tried to install Crispr_DART tool and its related dependency programs. I also downloaded separately GATK-v3.8-0-ge9d806836 and extracted the zip folder after which i got only GenomeAnalysisTK.jar file inside the folder. Next, I gave path for java and gatk in settings.yaml file along with all input files location as well as output directory. Finally when I tried to execute the program. It did not output any result files in the output gatk subfolder created inside the parent output folder Crispr_DART. When I checked the log files generated for gatk step, it was showing following error.
ERROR StatusLogger Unable to create class org.apache.logging.log4j.core.impl.Log4jContextFactory specified in jar:file:/data/ngs/programs/crispr_DART/tool_gatk_3.8/GenomeAnalysisTK-3.8-0-ge9d806836/GenomeAnalysisTK.jar!/META-INF/log4j-provider.properties
ERROR StatusLogger Log4j2 could not find a logging implementation. Please add log4j-core to the classpath. Using SimpleLogger to log to the console...
Please help me to resolve the issue and generate complete result files.
Thanks
Nihar
The text was updated successfully, but these errors were encountered: