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BIMSB bioinformatics platform / Akalin Lab

git repositories for the Akalin lab

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  1. janggu janggu Public

    Deep learning infrastructure for genomics

    Jupyter Notebook 258 34

  2. VoltRon VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    R 96 17

  3. genomation genomation Public

    R package for genomic feature analysis and visualization

    R 76 24

  4. compgen2021 compgen2021 Public

    R 76 24

  5. compgen_course_2025_module3 compgen_course_2025_module3 Public

    Compgen Course 2025, Module 3 Course Material, Multi-omics integration using deep learning

    Jupyter Notebook 56 24

  6. flexynesis flexynesis Public

    A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

    Python 51 13

Repositories

Showing 10 of 109 repositories
  • ImageArray Public
    BIMSBbioinfo/ImageArray’s past year of commit activity
    R 0 1 0 0 Updated Apr 10, 2025
  • anglemania Public

    Improved feature extraction for scRNA-seq dataset integration.

    BIMSBbioinfo/anglemania’s past year of commit activity
    R 0 GPL-3.0 0 19 0 Updated Apr 9, 2025
  • flexynesis Public

    A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

    BIMSBbioinfo/flexynesis’s past year of commit activity
    Python 51 13 11 0 Updated Apr 8, 2025
  • BIMSBbioinfo/OncoLLMBenchmark’s past year of commit activity
    Python 1 0 0 0 Updated Apr 4, 2025
  • pigx-common Public

    Common infrastructure used by all PiGx pipelines

    BIMSBbioinfo/pigx-common’s past year of commit activity
    Python 0 GPL-3.0 1 2 2 Updated Apr 3, 2025
  • VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    BIMSBbioinfo/VoltRon’s past year of commit activity
    R 96 MIT 17 1 0 Updated Mar 18, 2025
  • compgen_course_2025_module3 Public

    Compgen Course 2025, Module 3 Course Material, Multi-omics integration using deep learning

    BIMSBbioinfo/compgen_course_2025_module3’s past year of commit activity
    Jupyter Notebook 56 24 0 0 Updated Mar 18, 2025
  • ZarrDataFrame Public
    BIMSBbioinfo/ZarrDataFrame’s past year of commit activity
    R 0 MIT 1 0 0 Updated Mar 17, 2025
  • flexynesis-benchmarks Public

    Comprehensive continuous benchmarking of tools for multi-omics data integration

    BIMSBbioinfo/flexynesis-benchmarks’s past year of commit activity
    Python 2 1 2 0 Updated Mar 3, 2025
  • guix-bimsb Public

    Packages for GNU Guix that have not yet or will not be submitted upstream for various reasons

    BIMSBbioinfo/guix-bimsb’s past year of commit activity
    Scheme 16 GPL-3.0 4 0 0 Updated Feb 20, 2025

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