Genome Inspector Web v1.0

Genome Inspector Web is an interactive tool for DNA sequence analysis. With this web application, you can perform various DNA sequence operations such as transcription, translation, reverse complement, GC content analysis, melting temperature calculation and much more. Designed for both researchers and bioinformatics enthusiasts, Genome Inspector simplifies complex tasks into an easy-to-use interface.

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Features

• DNA Sequence Transcription: Convert a DNA sequence into its corresponding RNA sequence.
• DNA Complement: Generate the complementary DNA sequence.
• Reverse Complement: Obtain the reverse complement of the DNA sequence.
• Translation to Amino Acids: Translate DNA sequences into protein sequences.

• GC Content Calculation: Calculate the percentage of GC content in the DNA sequence.
• Nucleotide Frequency Analysis: Determine the frequency of each nucleotide in a sequence.
• Melting and Annealing Temperature: Compute the melting and annealing temperatures for primers.
• Supports FASTA File Upload: Upload your DNA sequence in FASTA format for analysis.

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Try Genome Inspector Web

You can try Genome Inspector Web v1.0 live at:
Genome Inspector Web

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Prerequisites

• Ensure that you have a modern browser (Google Chrome, Firefox, etc.).
• Internet connection to access external libraries and stylesheets.

Usage

Entering DNA Sequence

• Text Input: You can manually type a DNA sequence into the provided textarea.
• FASTA File Upload: Upload a FASTA file using the "Upload FASTA file" button to input a DNA sequence.

Performing Analysis

1. Choose the analysis type from the dropdown:

   • Transcribe DNA
   • Complement
   • Reverse Complement
   • Translate to Amino Acids
   • Melting Temperature, etc.

2. Click the Analyze button to perform the selected analysis on the DNA sequence.

3. The result will be displayed below the input fields.

4. You can Save the results as a file by clicking the Save button.

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Technologies Used

• HTML5: Structure of the web page.
• CSS3: Styling of the user interface.
• JavaScript: Functionality for DNA sequence analysis.
• Font Awesome: For attractive icons.
• FASTA Parsing: JavaScript functions to read and handle FASTA files.

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Contributing

We welcome contributions from the community! If you'd like to improve the Genome Inspector Web tool or add new features, feel free to fork the repository and submit a pull request.

Here are some ways you can contribute:

• Report bugs or issues.
• Suggest new features or improvements.
• Review pull requests.
• Fix bugs or implement new features.

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License

This project is licensed under the MIT License - see the LICENSE file for details.

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Author

Atharva Tilewale
Computational Biologist | Bioinformatician | Developer | Researcher

For any inquiries, you can reach me at:
GitHub
LinkedIn

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Acknowledgments

• Thanks to the open-source community for various tools and resources used in this project.
• Special thanks to Font Awesome for providing the icons used in the UI.

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Feel free to explore the project and start analyzing your DNA sequences today with Genome Inspector Web v1.0!
© 2024 Atharva Tilewale