MSTmap is a software tool that builds genetic linkage maps efficiently and accurately.
- Extremely fast and computationally efficient
- Written in Python, Cython, and C++
- Find the web version here https://mstmap.org/
- This repo contains the Python library for the original C++ software https://github.com/ucrbioinfo/MSTmap presented in https://doi.org/10.1371/journal.pgen.1000212
You may find the documentation for MSTmap Python at its GitHub Wiki.
Install the package via pip install mstmap, also here https://pypi.org/project/mstmap/. Supported on Ubuntu Linux and Python >= 3.7.
If you run into any issues or have suggestions for MSTmap Python or the web server, please report them on our GitHub Issues tracker. It's the fastest way to get support and helps us improve MSTmap for everyone.
MSTmap Python and Online have been developed and are maintained by Amir Mohseni, and Stefano Lonardi at the University of California, Riverside.
Wu, Yonghui, et al. "Efficient and accurate construction of genetic linkage maps from the minimum spanning tree of a graph." PLoS genetics 4.10 (2008): e1000212.