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Port module for assigning consensus cell types from OpenScPCA-analysis #111

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allyhawkins opened this issue Jan 13, 2025 · 0 comments · May be fixed by #113
Open
3 tasks

Port module for assigning consensus cell types from OpenScPCA-analysis #111

allyhawkins opened this issue Jan 13, 2025 · 0 comments · May be fixed by #113
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@allyhawkins
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We want to add a module for assigning consensus cell types to all ScPCA samples, using the consensus cell type reference that we created in OpenScPCA-analysis. We should use the same approach used in assign-consensus-celltypes.sh.

To complete this, we need to do the following:

  • move the reference files to somewhere on S3 that can be used as input to this module.
  • Port over the scripts, 03-save-coldata.R and 04-combine-celltypes.R
  • write a workflow that has two processes, one for grabbing the colData and one for combining everything and assigning the consensus labels.
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