Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Run the script to generate consensus cell types in ScPCA samples and save the output #980

Open
allyhawkins opened this issue Jan 9, 2025 · 1 comment
Assignees
Labels

Comments

@allyhawkins
Copy link
Member

If you are filing this issue based on a specific GitHub Discussion, please link to the relevant Discussion.

#853

Describe the goals of the changes to the analysis module.

Once we have completed #969 and #979 we want to go ahead and run the script that's being added in #977 to generate the consensus cell types for all samples. Then we'll want to save the output TSV file to a location that we can use for further analysis. My guess is it will be to large for GitHub so to start we can just put it in results on S3.

What will your pull request contain?

There probably won't be a PR attached to this. I'm just filing this to track actually running the script and saving the output files.

Will you require additional software beyond what is already in the analysis module?

No response

Will you require different computational resources beyond what the analysis module already uses?

No response

If known, when do you expect to file the pull request?

No response

@allyhawkins allyhawkins self-assigned this Jan 10, 2025
@allyhawkins
Copy link
Member Author

Note that we are now moving this over to OpenScPCA-nf before actually running everything.
See AlexsLemonade/OpenScPCA-nf#111

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

1 participant