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AlexsLemonade · Jan 14, 2025 · 013fd7c · 013fd7c
1 parent 626b174
commit 013fd7c
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/analyses/hello-clusters/02_compare-clustering-parameters.Rmd b/analyses/hello-clusters/02_compare-clustering-parameters.Rmd
@@ -221,8 +221,8 @@ cell_metric_list <- cluster_results_list |>
       # calculate silhouette width
       silhouette_df <- rOpenScPCA::calculate_silhouette(pca_matrix, cluster_df)
 
-      # calculate neighbhorhood purity
-      purity_df <- rOpenScPCA::calculate_purity(pca_matrix, silhouette_df)
+      # calculate neighbhorhood purity, starting from silhouette_df
+      OpenScPCA::calculate_purity(pca_matrix, silhouette_df)
     }
   )