This repository has been archived by the owner on Jun 21, 2023. It is now read-only.
CBTTC: specimens pipeline, cell lines generation, DNA/RNA extraction and data generation section of materials and methods #39
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
There was a problem hiding this comment.
Thanks for this contribution @mkoptyra. The level of detail looks great. I've left a few comments:
- The URL citations need
@urlat the beginning of them. I've suggested changes to the ones I spotted, but I may not have caught them all. - I left some questions about including information about clinical reports and if cell line data is included in the data release.
Co-Authored-By: Jaclyn Taroni <jaclyn.n.taroni@gmail.com>
Co-Authored-By: Jaclyn Taroni <jaclyn.n.taroni@gmail.com>
Co-Authored-By: Jaclyn Taroni <jaclyn.n.taroni@gmail.com>
Co-Authored-By: Jaclyn Taroni <jaclyn.n.taroni@gmail.com>
Co-Authored-By: Jaclyn Taroni <jaclyn.n.taroni@gmail.com>
content/03.methods.md
Outdated
| #### Pacific Pediatric Neuro Onclology Consortium (PNOC) | ||
|
|
||
| The Pacific Pediatric Neuro-Oncology Consortium (PNOC) is an international consortium dedicated to bringing new therapies to children and young adults with brain tumors. | ||
| PNOC collected blood and tumor biospecimens from newly-diagnosed DIPG patients as part of the clinical trial [PNOC003/NCT02274987](@url:https://clinicaltrials.gov/ct2/show/NCT02274987) [@doi:10.1002/ijc.32258]. |
There was a problem hiding this comment.
Suggested change
| PNOC collected blood and tumor biospecimens from newly-diagnosed DIPG patients as part of the clinical trial [PNOC003/NCT02274987](@url:https://clinicaltrials.gov/ct2/show/NCT02274987) [@doi:10.1002/ijc.32258]. | |
| PNOC collected blood and tumor biospecimens from newly-diagnosed DIPG patients as part of the clinical trial [PNOC003/NCT02274987](https://clinicaltrials.gov/ct2/show/NCT02274987) [@doi:10.1002/ijc.32258]. |
This should be as it was because it is an in-line style link and not a citation. I will make this change. It's the last thing to do before merging.
jaclyn-taroni
approved these changes
Sep 15, 2019
|
Thank you for this contribution @mkoptyra! |
cgreene
pushed a commit
that referenced
this pull request
Sep 15, 2019
This build is based on 1b80ce4. This commit was created by the following Travis CI build and job: https://travis-ci.com/AlexsLemonade/OpenPBTA-manuscript/builds/127686214 https://travis-ci.com/AlexsLemonade/OpenPBTA-manuscript/jobs/235516932 [ci skip] The full commit message that triggered this build is copied below: Merge pull request #39 from mkoptyra/master CBTTC: specimens pipeline, cell lines generation, DNA/RNA extraction and data generation section of materials and methods
cgreene
pushed a commit
that referenced
this pull request
Sep 15, 2019
This build is based on 1b80ce4. This commit was created by the following Travis CI build and job: https://travis-ci.com/AlexsLemonade/OpenPBTA-manuscript/builds/127686214 https://travis-ci.com/AlexsLemonade/OpenPBTA-manuscript/jobs/235516932 [ci skip] The full commit message that triggered this build is copied below: Merge pull request #39 from mkoptyra/master CBTTC: specimens pipeline, cell lines generation, DNA/RNA extraction and data generation section of materials and methods
Sign up for free
to subscribe to this conversation on GitHub.
Already have an account?
Sign in.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Purpose
Briefly describe your changes here.
added sections for materials and methods: CBTTC: specimens pipeline, cell lines generation, DNA/RNA extraction, and data generation
Issue
What GitHub issue does your pull request address?
Pull review checklist
The PR will be considered ready for review when all four items have been checked.