AlexsLemonade · jaclyn-taroni · Apr 1, 2021 · Mar 30, 2021 · Mar 30, 2021 · Mar 31, 2021
diff --git a/analyses/oncoprint-landscape/01-plot-oncoprint.R b/analyses/oncoprint-landscape/01-plot-oncoprint.R
@@ -233,6 +233,8 @@ oncoplot(
   SampleNamefontSize = 0.5,
   fontSize = 0.7,
   colors = oncoprint_col_palette,
-  annotationColor = annotation_colors
+  annotationColor = annotation_colors,
+  bgCol = "#F5F5F5",
+  top = 25
 )
 dev.off()
diff --git a/analyses/oncoprint-landscape/plots/all_participants_primary-plus_goi_oncoprint.png b/analyses/oncoprint-landscape/plots/all_participants_primary-plus_goi_oncoprint.png
diff --git a/analyses/oncoprint-landscape/plots/all_participants_primary-plus_oncoprint.png b/analyses/oncoprint-landscape/plots/all_participants_primary-plus_oncoprint.png
diff --git a/analyses/oncoprint-landscape/plots/all_participants_primary_only_goi_oncoprint.png b/analyses/oncoprint-landscape/plots/all_participants_primary_only_goi_oncoprint.png
diff --git a/analyses/oncoprint-landscape/plots/all_participants_primary_only_oncoprint.png b/analyses/oncoprint-landscape/plots/all_participants_primary_only_oncoprint.png
diff --git a/figures/palettes/oncoprint_color_palette.tsv b/figures/palettes/oncoprint_color_palette.tsv
@@ -11,7 +11,7 @@ In_Frame_Ins	#FFE4E1
 Stop_Codon_Ins	#CC79A7
 Start_Codon_Del	#56B4E9
 Fusion	#7B68EE
-Multi_Hit	#00F021
+Multi_Hit	#CCCCCC
 Hom_Deletion	#313695
 Hem_Deletion	#abd9e9
 amplification	#c51b7d

diff --git a/figures/pngs/fig3-oncoprint-landscape.png b/figures/pngs/fig3-oncoprint-landscape.png