Update molecular subtyping file

[jharenza]

What data file(s) does this issue pertain to?

https://github.com/AlexsLemonade/OpenPBTA-analysis/blob/master/analyses/molecular-subtyping-pathology/results/compiled_molecular_subtypes_with_pathology_feedback.tsv

What release are you using?

NA

Put a link to the relevant section of the OpenPBTA-manuscript here.

NA

Put your question or report your issue here.

Please add "Updated via OpenPBTA subtyping" to the Notes field for all rows in which subtypes were determined via OpenPBTA subtyping and perhaps "Updated via OpenPBTA subtyping and pathology assessment" (or similar) for tracking purposes.

cc @jaclyn-taroni and @baileyckelly

[jaclyn-taroni]

Do you have specific examples where the Notes column needs to be changed? Many rows already contain "Updated via OpenPBTA subtyping."

[jharenza]

Looks like LGG, for instance, are NA, but have been subtyped.

[jaclyn-taroni]

I will defer to @baileyckelly and @allisonheath, as I know there are changes to how the clinical file are being generated (#656). I find "Updated via OpenPBTA subtyping" ambiguous – it could mean that the histology label changed, it could mean the addition of a subtype label. That's why I left it off of LGG.

[jharenza]

updated in #854