Code

Sync with mrhardiflow#7

Code

Merged

AlexVCaron merged 22 commits intomasterAlexVCaron/versaFlow:masterfrom update/mrhardiflowAlexVCaron/versaFlow:update/mrhardiflowCopy head branch name to clipboardAug 5, 2024

+1,230-987

Commits

Commits on Feb 13, 2024

• pull changes from beluga

  AlexVCaron

  committed
  d1ddabf

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Commits on Mar 25, 2024

• update t1 registration parameters

  AlexVCaron

  committed
  b7717d6

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Commits on Jun 20, 2024

• registration with cc, nlmneans with coils, better n4, can skip dwi preproc

  AlexVCaron

  committed
  b154bab

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Commits on Jul 2, 2024

• robustify registration, at the cost of time execution (get a big CPU machine or wait)

  AlexVCaron

  committed
  7c5552a

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Commits on Jul 4, 2024

• affine for fuji

  AlexVCaron

  committed
  88d921a

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Commits on Jul 16, 2024

• fix registration

  AlexVCaron

  committed
  81b6494

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Commits on Jul 20, 2024

• optimize topup

  AlexVCaron

  committed
  de4451f

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• optimize n4

  AlexVCaron

  committed
  3c46635

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• remove dumb stuff

  AlexVCaron

  committed
  f26c98b

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• remove long unuseful alignment before topup, do your work acquisitionners

  AlexVCaron

  committed
  de46410

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• all registration with crop to mask before, if available. Do it, it so much simple with it (can be a crude box that fits the brain), I can do center-of-mass initialization !

  AlexVCaron

  committed
  70b299b

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• optimize registration

  AlexVCaron

  committed
  1ff5d5a

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Commits on Jul 22, 2024

• fix n4 denoising on dwi

  AlexVCaron

  committed
  faf5891

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• n4fort1

  AlexVCaron

  committed
  97ce0d7

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• improve b0 affine alignment near the cortex, adding back the b0, using the PA for contours only

  AlexVCaron

  committed
  8f162eb

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• faster t1 registration syn, affine should do its work

  AlexVCaron

  committed
  ca90fc4

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Commits on Jul 23, 2024

• further upgrade to registration

  AlexVCaron

  committed
  4670dbf

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Commits on Jul 24, 2024

• use bet mask when available and said so

  AlexVCaron

  committed
  663d84d

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Commits on Aug 5, 2024

• reduce last syn, no need to be that long

  AlexVCaron

  committed
  2865aef

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• update readme

  AlexVCaron

  committed
  8edb347

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• Merge pull request #44 from AlexVCaron/madi/registration

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  AlexVCaron

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  9f65c07

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• change naming

  AlexVCaron

  committed
  e6c4dcd

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