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@@ -21,3 +21,8 @@ libext/ | |
| # Simulink Code Generation | ||
| slprj/ | ||
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| # Ignore Mac DS_Store files | ||
| .DS_Store | ||
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| # Ignore *~ files | ||
| *~ | ||
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,40 @@ | ||
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| im = imread('peppers.png'); | ||
| [nr, nc, ns] = size(im); | ||
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| [ir, ic] = ind2sub([nr nc], 1:nr*nc); | ||
| ir = ir(:); | ||
| ic = ic(:); | ||
| slice = ones(size(ir)); | ||
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| dbname = 'txg-scidb01'; | ||
| DB = DBsetupSciDB(dbname); | ||
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| rowChunkSize = nr; | ||
| colChunkSize = nc; | ||
| sliceChunkSize = 1; | ||
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| ls(DB) | ||
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| T = DB( sprintf('D4Mtest_%s <val:uint8> [rows=1:%d,%d,0, cols=1:%d,%d,0, slice=1:%d,1,0]', datestr(now, 30), nr, nr, nc, nc, ns) ); | ||
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| % import data | ||
| putTriple( T, [ir ic slice], double( reshape(im(:,:,1), [nr*nc 1] ) ) ); | ||
| putTriple( T, [ir ic slice*2], double( reshape(im(:,:,2), [nr*nc 1] ) ) ); | ||
| putTriple( T, [ir ic slice*3], double( reshape(im(:,:,3), [nr*nc 1] ) ) ); | ||
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| % extract data | ||
| v1 = T(:,:,1); | ||
| disp( nnz( v1 - double(im(:,:,1)) ) ); % this should be 0 | ||
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| v2 = T(:,:,2); | ||
| disp( nnz( v2 - double(im(:,:,2)) ) ); % this should be 0 | ||
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| v3 = T(:,:,3); | ||
| disp( nnz( v3 - double(im(:,:,3)) ) ); % this should be 0 | ||
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| % cleanup | ||
| deleteForce(T); | ||
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| ls(DB) | ||
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| Original file line number | Diff line number | Diff line change |
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| @@ -1,38 +1,148 @@ | ||
| <?xml version="1.0"?> | ||
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| <project name="d4m_api" default="all" basedir="."> | ||
| <property file="${basedir}/default_build.properties"/> | ||
| <!-- <property file="${basedir}/default_build.properties"/> --> | ||
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| <import file="${basedir}/../d4m_api_java/build_common_targets.xml"/> | ||
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| <target name="init_local" depends="init"> | ||
| <filter filtersfile="${base_property_file_name}"/> | ||
| <filter filtersfile="${full_property_file_name}"/> | ||
| <filter token="version_number" value="${version_number}"/> | ||
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| <ant antfile="${basedir}/../d4m_api_java/build.xml" dir="../d4m_api_java" | ||
| inheritAll="false" inheritRefs="false" target="build_jar" /> | ||
| <copy todir="${basedir}/lib" file="${basedir}/../d4m_api_java/build/dist/lib/D4M_API_JAVA.jar"/> | ||
| <!-- <import file="${basedir}/../d4m_api_java/build_common_targets.xml"/> --> | ||
| <property name="build.dir" value="${basedir}/build"/> | ||
| <property name="lib.dir" value="${basedir}/lib"/> | ||
| <property name="src.dir" value="${basedir}/src"/> | ||
| <property name="test_src.dir" value="${basedir}/test"/> | ||
| <property name="dist.dir" value="${build.dir}/dist"/> | ||
| <property name="bin.dir" value="${build.dir}/dist/bin"/> | ||
| <property name="test.reports" value="${basedir}/build/reports"/> | ||
| <property name="version.num" value="3.0.0"/> | ||
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| <target name="clean"> | ||
| <delete dir="${build.dir}"/> | ||
| </target> | ||
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| <target name="init_local" depends="init"> | ||
| <copy todir="${dist.dir}"> | ||
| <fileset dir="${basedir}"> | ||
| <include name="docs/**"/> | ||
| <exclude name="docs/CHANGELOG.txt"/> | ||
| <include name="matlab_src/**"/> | ||
| <exclude name="matlab_src/html/**"/> | ||
| <include name="TEST/**"/> | ||
| <include name="lib/**"/> | ||
| <include name="libext/**"/> | ||
| <include name="examples/**"/> | ||
| <include name="COPYING.txt"/> | ||
| <include name="COPYRIGHT.txt"/> | ||
| <include name="README.txt"/> | ||
| <include name="VERSION.txt"/> | ||
| </fileset> | ||
| </copy> | ||
| </target> | ||
| <target name="init_test_release" depends="init"> | ||
| <copy todir="${dist.dir}"> | ||
| <fileset dir="${basedir}"> | ||
| <include name="docs/**"/> | ||
| <include name="matlab_src/**"/> | ||
| <include name="TEST/**"/> | ||
| <include name="examples/**"/> | ||
| </fileset> | ||
| </copy> | ||
| <copy todir="${dist.dir}"> | ||
| <fileset dir="${basedir}/../d4m_api_java/target"> | ||
| <include name="graphulo-${version.num}-libext.zip"/> | ||
| </fileset> | ||
| </copy> | ||
| <copy todir="${dist.dir}/lib"> | ||
| <fileset dir="${basedir}/../d4m_api_java/target"> | ||
| <include name="graphulo-${version.num}.jar"/> | ||
| <include name="graphulo-${version.num}-alldeps.jar"/> | ||
| </fileset> | ||
| </copy> | ||
| <!-- | ||
| <copy todir="${dist.dir}/matlab_src"> | ||
| <fileset dir="${basedir}/../d4m_api_java/target"> | ||
| <include name="DBinit.m"/> | ||
| </fileset> | ||
| </copy> | ||
| --> | ||
| </target> | ||
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| <target name="init" depends=""> | ||
| <mkdir dir="${build.dir}/dist"/> | ||
| <mkdir dir="${build.dir}/dist/docs"/> | ||
| <mkdir dir="${build.dir}/dist/examples"/> | ||
| <mkdir dir="${build.dir}/dist/lib"/> | ||
| <mkdir dir="${build.dir}/dist/libext"/> | ||
| </target> | ||
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| <!-- copy scripts into bin directory --> | ||
| <copy todir="${dist.dir}/bin" > | ||
| <fileset dir="${basedir}/scripts"> | ||
| <include name="**"/> | ||
| </fileset> | ||
| </copy> | ||
| <chmod dir="${dist.dir}/bin" perm="uag+x" includes="**/*.sh"/> | ||
| <target name="build_distribution" depends=""> | ||
| <zip destfile="${build.dir}/${ant.project.name}_${version.num}.zip"> | ||
| <zipfileset dir="${build.dir}/dist" prefix="${ant.project.name}_${version.num}"> | ||
| <include name="**/**"/> | ||
| <exclude name="**/*.sh"/> | ||
| <exclude name="**/ant-contrib*.jar"/> | ||
| </zipfileset> | ||
| </zip> | ||
| </target> | ||
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| <target name="all" depends="clean, init_local, build_distribution" description="Build a distribution of the whole software package"/> | ||
| <taskdef resource="net/sf/antcontrib/antcontrib.properties"> | ||
| <classpath> | ||
| <pathelement location="${basedir}/lib/ant-contrib-1.0b3.jar"/> | ||
| </classpath> | ||
| </taskdef> | ||
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| <target name="get-graphulo-libext-version"> | ||
| <path id="artifact.id.path"> | ||
| <fileset dir="."> | ||
| <include name="graphulo-*-libext.zip"/> | ||
| </fileset> | ||
| </path> | ||
| <property name="artifact.id.file" refid="artifact.id.path"/> | ||
| <echo message="artifact.id.file: ${artifact.id.file}"/> | ||
| <propertyregex property="graphulo.version" input="${artifact.id.file}" regexp=".*graphulo-(.*)-libext.zip" select="\1" /> | ||
| <echo message="artifact.id: ${graphulo.version}"/> | ||
| </target> | ||
| <target name="unzip-libext" depends="init,get-graphulo-libext-version"> | ||
| <unzip src="graphulo-${graphulo.version}-libext.zip" dest="${build.dir}/dist"> | ||
| <patternset> | ||
| <include name="**/*.jar"/> | ||
| <exclude name="**/DBinit.m"/> | ||
| </patternset> | ||
| </unzip> | ||
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| </target> | ||
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| <target name="all" | ||
| depends="clean, init_local, unzip-libext, build_distribution" | ||
| description="Build a distribution of the whole software package"/> | ||
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| <target name="my-echo" > | ||
| <fileset id="myfileset" dir="${basedir}/matlab_src"> | ||
| <include name="*.m" /> | ||
| </fileset> | ||
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| <pathconvert pathsep="${line.separator}" property="sounds" refid="myfileset"> | ||
| <!-- Add this if you want the path stripped --> | ||
| <mapper> | ||
| <flattenmapper /> | ||
| </mapper> | ||
| </pathconvert> | ||
| <echo file="${basedir}/my_matlab_src.txt">${sounds}</echo> | ||
| </target> | ||
| <target name="make-test-release" description="Target for making test release using a snapshot of d4m_api_java" | ||
| depends="clean,init_test_release"> | ||
| <!-- new lib --> | ||
| <!-- new libext --> | ||
| <!-- new DBinit.m --> | ||
| <unzip src="${dist.dir}/graphulo-${version.num}-libext.zip" dest="${build.dir}/dist"> | ||
| <patternset> | ||
| <include name="**/*.jar"/> | ||
| <include name="**/DBinit.m"/> | ||
| </patternset> | ||
| </unzip> | ||
| <copy todir="${dist.dir}/matlab_src" overwrite="true" verbose="true"> | ||
| <fileset dir="${dist.dir}"> | ||
| <include name="DBinit.m"/> | ||
| </fileset> | ||
| </copy> | ||
| <delete file="${dist.dir}/DBinit.m"/> | ||
| <antcall target="build_distribution"/> | ||
| </target> | ||
| </project> |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,34 @@ | ||
| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% | ||
| % Setup binding to a database. | ||
| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% | ||
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| myName = 'mytable_'; % SET LOCAL LABEL TO AVOID COLLISIONS. | ||
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| [DB,G] = DBsetupLLGrid('class-db05'); % Create binding to database. Shorthand for: | ||
| %INSTANCENAME = 'instance-1.7.0'; | ||
| %DB = DBserver('localhost:2181','Accumulo',INSTANCENAME,'root','secret'); | ||
| %G = DBaddJavaOps('edu.mit.ll.graphulo.MatlabGraphulo',INSTANCENAME,'localhost:2181','root','secret'); | ||
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| % Create Adj Tables | ||
| TadjName=[myName 'Tadj']; | ||
| Tadj = DB(TadjName,[TadjName 'T']); % Create database table pair for holding adjacency matrix. | ||
| TadjDeg = DB([myName 'TadjDeg']); % Create database table for counting degree. | ||
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| % Create Incidence Tables | ||
| TedgeName=[myName 'Tedge']; | ||
| Tedge = DB(TedgeName,[TedgeName 'T']); % Create database table pair for holding incidense matrix. | ||
| TedgeDeg = DB([myName 'TedgeDeg']); % Create database table for counting degree. | ||
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| % Create Single Table | ||
| TsingleName=[myName 'Tsingle']; | ||
| Tsingle = DB(TsingleName); % Create database table pair for holding single table matrix. | ||
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| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% | ||
| % D4M: Dynamic Distributed Dimensional Data Model | ||
| % Architect: Dr. Jeremy Kepner (kepner@ll.mit.edu) | ||
| % Software Engineer: Dr. Jeremy Kepner (kepner@ll.mit.edu) | ||
| % MIT Lincoln Laboratory | ||
| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% | ||
| % (c) <2010> Massachusetts Institute of Technology | ||
| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% | ||
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