a running problem need help

[code-spirit]

After installed RNA-skim,I got an error when runing with test_data and data downloaded from ncbi. the test_data results with only -nan values. data of ncbi sra terminated with error:
E0608 20:01:36.749588 14965 rolling_hash_counter.cc:109] The seq size is smaller than the key_length:
[libprotobuf FATAL ../lib/protobuf-2.5.0/src/google/protobuf/repeated_field.h:824] CHECK failed: (index) < (size()):
terminate called after throwing an instance of 'google::protobuf::FatalException'
what(): CHECK failed: (index) < (size()):
Aborted (core dumped)

I'm looking for solutions but nerver get sense, really need your help!
Thanks!