diff --git a/README.md b/README.md index f6713b9..15affaa 100644 --- a/README.md +++ b/README.md @@ -395,7 +395,8 @@ Tetracendron_sinense|Tesin01G0062600 Trochodendron_aralioides|evm.TU.group9.7 ``` #### Orthology format #### -The outputs from [OrthoFinder2](https://github.com/davidemms/OrthoFinder) and OrthoMCL are supported: +The outputs from [OrthoFinder2](https://github.com/davidemms/OrthoFinder), OrthoMCL, +[Broccoli](https://github.com/rderelle/Broccoli), [SonicParanoid2](https://gitlab.com/salvo981/sonicparanoid2) are supported: ``` # OrthoFinder2 output directory like: OrthoFinder/OrthoFinder/Results_Jun25/ @@ -409,7 +410,7 @@ Tetracendron_sinense|Tesin01G0060800 Trochodendron_aralioides|evm.TU.group9.7 ``` #### Gene coordinate format #### -The gff/bed format for JCVI, MCscanX and WGDI are also supported: +The gff/bed format for JCVI, MCscanX and WGDI are supported: ``` # gff for WGDI: Dc1 Daucus_carota|DCAR_000504 20809 26333 + 1 Daucus_carota|DCAR_000504 diff --git a/evolution_example b/evolution_example index d9317d1..bfa622a 160000 --- a/evolution_example +++ b/evolution_example @@ -1 +1 @@ -Subproject commit d9317d12afeda61b7273aa1193a55515c33dfff1 +Subproject commit bfa622aa6a0a462b006e89a4ab949607de23bd83 diff --git a/soi/__version__.py b/soi/__version__.py index 9046f19..e6956dc 100644 --- a/soi/__version__.py +++ b/soi/__version__.py @@ -1 +1 @@ -version = '1.0.5' +version = '1.1'