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genericModelMetadataSchema_104.json
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{
"$defs":{
"genericModel": {
"type": "object",
"properties": {
"generalInformation": {
"type": "object",
"properties": {
"name": {
"type": "string",
"description": "A name given to the model or data",
"title": "Name"
},
"source": {
"type": "string",
"description": "A source from which the model/data is derived",
"title": "Source",
"externalEnum": "source"
},
"identifier": {
"type": "string",
"description": "An unambiguous ID given to the model or data. This can also be created automatically by a software tool",
"title": "Identifier"
},
"author": {
"type": "array",
"description": "Person(s) who generated the model code or generated the data set originally",
"items": {
"type": "object",
"description": "Object defined according to vCard standard 4.0",
"properties": {
"title": {
"type": "string",
"description": "Specifies the job title, functional position or function of the individual associated.",
"title": "Title"
},
"familyName": {
"type": "string",
"description": "Family name or surname.",
"format": "long-text",
"title": "Family name"
},
"givenName": {
"type": "string",
"description": "Given name",
"format": "long-text",
"title": "Given name"
},
"email": {
"type": "string",
"description": "The address for electronic mail communication.",
"format": "email",
"title": "Email"
},
"telephone": {
"type": "string",
"description": "The canonical number string for a telephone number for telephony communication.",
"title": "Telephone"
},
"streetAddress": {
"type": "string",
"description": "Physical delivery address",
"title": "Address"
},
"country": {
"type": "string",
"description": "Full name of the country in English",
"title": "Country"
},
"zipCode": {
"type": "string",
"description": "Postal code",
"title": "Zip code"
},
"region": {
"type": "string",
"description": "State or province",
"title": "Region"
},
"timeZone": {
"type": "string",
"description": "Time zone",
"title": "Timezone"
},
"gender": {
"type": "string",
"description": "Sex and gender identity. M (male), F (female), O (other), N (none or not applicable) and U (unknown)",
"title": "Gender"
},
"note": {
"type": "string",
"description": "Supplemental information or a comment",
"title": "Note"
},
"organization": {
"type": "string",
"description": "Organization information",
"format": "long-text",
"title": "Organization"
}
},
"required": [
"email"
]
},
"title": "Author list"
},
"creator": {
"type": "array",
"description": "The person(s) that created this FSK file including all metadata",
"minItems": 1,
"items": {
"type": "object",
"description": "Object defined according to vCard standard 4.0",
"properties": {
"title": {
"type": "string",
"description": "Specifies the job title, functional position or function of the individual associated.",
"title": "Title"
},
"familyName": {
"type": "string",
"description": "Family name or surname.",
"format": "long-text",
"title": "Family name"
},
"givenName": {
"type": "string",
"description": "Given name",
"format": "long-text",
"title": "Given name"
},
"email": {
"type": "string",
"description": "The address for electronic mail communication.",
"format": "email",
"title": "Email"
},
"telephone": {
"type": "string",
"description": "The canonical number string for a telephone number for telephony communication.",
"title": "Telephone"
},
"streetAddress": {
"type": "string",
"description": "Physical delivery address",
"title": "Address"
},
"country": {
"type": "string",
"description": "Full name of the country in English",
"title": "Country"
},
"zipCode": {
"type": "string",
"description": "Postal code",
"title": "Zip code"
},
"region": {
"type": "string",
"description": "State or province",
"title": "Region"
},
"timeZone": {
"type": "string",
"description": "Time zone",
"title": "Timezone"
},
"gender": {
"type": "string",
"description": "Sex and gender identity. M (male), F (female), O (other), N (none or not applicable) and U (unknown)",
"title": "Gender"
},
"note": {
"type": "string",
"description": "Supplemental information or a comment",
"title": "Note"
},
"organization": {
"type": "string",
"description": "Organization information",
"format": "long-text",
"title": "Organization"
}
},
"required": [
"email"
]
},
"title": "Creator list"
},
"creationDate": {
"type": "string",
"description": "Creation date/time of the FSK file",
"format": "date",
"title": "Creation date"
},
"modificationDate": {
"type": "array",
"description": "Date/time of the last version of the FSK file",
"items": {
"type": "string",
"format": "date"
},
"title": "Modification date"
},
"rights": {
"type": "string",
"description": "Rights granted for usage, distribution and modification of this FSK file",
"title": "Rights",
"externalEnum": "right"
},
"availability": {
"type": "string",
"description": "Availability of data or model, i.e. if the annotated model code / data is included in this FSK file",
"title": "Availability",
"externalEnum": "availability"
},
"url": {
"type": "string",
"description": "Web address referencing the resource location (data for example)",
"format": "uri",
"title": "URL"
},
"format": {
"type": "string",
"description": "File extension of the model or data file (including version number of format if applicable)",
"title": "Format",
"externalEnum": "format"
},
"reference": {
"type": "array",
"items": {
"type": "object",
"properties": {
"isReferenceDescription": {
"type": "boolean",
"description": "Indicates whether this specific publication serves as the reference description for the model. There has to be at least one reference where this field is set to 'True'",
"title": "Is_reference_description?"
},
"title": {
"type": "string",
"description": "Title of publication in which the model or date has been described",
"format": "long-text",
"title": "Title"
},
"doi": {
"type": "string",
"description": "The DOI related to this publication",
"format": "long-text",
"title": "Publication DOI"
},
"publicationType": {
"type": "string",
"description": "The type of publication, e.g. Report, Journal article, Book, Online database, ... ",
"enum": [
"ABST",
"ADVS",
"AGGR",
"ANCIENT",
"ART",
"BILL",
"BLOG",
"BOOK",
"CASE",
"CHAP",
"CHART",
"CLSWK",
"COMP",
"CONF",
"CPAPER",
"CTLG",
"DATA",
"DBASE",
"DICT",
"EBOOK",
"ECHAP",
"EDBOOK",
"EJOUR",
"ELECT",
"ENCYC",
"EQUA",
"FIGURE",
"GEN",
"GOVDOC",
"GRANT",
"HEAR",
"ICOMM",
"INPR",
"JOUR",
"JFULL",
"LEGAL",
"MANSCPT",
"MAP",
"MGZN",
"MPCT",
"MULTI",
"MUSIC",
"NEW",
"PAMP",
"PAT",
"PCOMM",
"RPRT",
"SER",
"SLIDE",
"SOUND",
"STAND",
"STAT",
"THES",
"UNPB",
"VIDEO"
],
"title": "Publication type"
},
"date": {
"type": "string",
"description": "Temporal information on the publication date",
"format": "year_date",
"title": "Date"
},
"pmid": {
"type": "string",
"description": "The PubMed ID related to this publication",
"title": "PubMed ID"
},
"authorList": {
"type": "string",
"description": "Name and surname of the authors who contributed to this publication",
"format": "long-text",
"title": "Author list"
},
"abstract": {
"type": "string",
"description": "Abstract of the publication in which the model or the data has been described ",
"title": "Abstract"
},
"journal": {
"type": "string",
"description": "Data on the details of the journal in which the model or date has been described",
"format": "long-text",
"title": "Journal"
},
"volume": {
"type": "string",
"description": "Data on the details of the volume in which the model or date has been described",
"title": "Volume"
},
"issue": {
"type": "string",
"description": "Data on the details of the issue in which the model or date has been described",
"title": "Issue"
},
"status": {
"type": "string",
"description": "The status of this publication, e.g. Published, Submitted, etc.",
"title": "Status"
},
"website": {
"type": "string",
"description": "A link to the publication website (different from DOI)",
"title": "Website"
},
"comment": {
"type": "string",
"description": "Further comments related to the reference description, e.g. which section in there describes the specific model or which figure in there can be reproduced with the visualization script",
"format": "long-text",
"title": "Comment"
}
},
"required": [
"isReferenceDescription",
"title",
"doi"
]
},
"title": "Description of reference"
},
"language": {
"type": "string",
"description": "A language of the resource (some data or reports can be available in French language for example)",
"title": "Language",
"externalEnum": "language"
},
"software": {
"type": "string",
"description": "The program or software language in which the model has been implemented",
"title": "Software",
"externalEnum": "software"
},
"languageWrittenIn": {
"type": "string",
"description": "Software language used to write the model, e.g. R or MatLab",
"title": "Language written in",
"externalEnum": "language_written_in"
},
"modelCategory": {
"type": "object",
"properties": {
"modelClass": {
"type": "string",
"description": "Type of model according to RAKIP classification",
"title": "Model class",
"externalEnum": "model_class"
},
"modelSubClass": {
"type": "array",
"description": "Sub-classification of the model given the Model Class",
"items": {
"type": "string"
},
"title": "Subclass",
"externalEnum": "model_subclass"
},
"modelClassComment": {
"type": "string",
"description": "Comment with further details on the model class",
"format": "long-text",
"title": "Comment"
},
"basicProcess": {
"type": "array",
"description": "Defines the impact of the process on the hazard (so far only valid for process models and predictive models)",
"items": {
"type": "string"
},
"title": "Basic process",
"externalEnum": "basic_process"
}
},
"required": [
"modelClass"
]
},
"status": {
"type": "string",
"description": "The curation status of the model",
"title": "Status",
"externalEnum": "status"
},
"objective": {
"type": "string",
"description": "Objective of the model or data",
"format": "long-text",
"title": "Objective"
},
"description": {
"type": "string",
"description": "General description of the study, data or model",
"format": "long-text",
"title": "Description"
}
},
"required": [
"name",
"identifier",
"creationDate",
"rights",
"reference"
]
},
"scope": {
"type": "object",
"properties": {
"product": {
"type": "array",
"items": {
"type": "object",
"properties": {
"name": {
"type": "string",
"description": "The product, matrix or environment (e.g food product, lab media, soil etc.) for which the model or data applies",
"title": "Name",
"externalEnum": "product_matrix"
},
"description": {
"type": "string",
"description": "Detailed description of the product, matrix or environment for which the model or data applies",
"format": "long-text",
"title": "Description"
},
"unit": {
"type": "string",
"description": "Unit of the product, matrix or environment for which the model or data applies",
"title": "Unit",
"externalEnum": "unit"
},
"method": {
"type": "array",
"description": "Type of production for the product/ matrix",
"items": {
"type": "string"
},
"title": "Method of production",
"externalEnum": "production_method"
},
"packaging": {
"type": "array",
"description": "Describe container or wrapper that holds the product/matrix. Common type of packaging (paper or plastic bags, boxes, tinplate or aluminium cans, plastic trays, plastic bottles, glass bottles or jars)",
"items": {
"type": "string"
},
"title": "Packaging",
"externalEnum": "packaging"
},
"treatment": {
"type": "array",
"description": "Used to characterise a product/matrix based on the treatment or processes applied to the product or any indexed ingredient",
"items": {
"type": "string"
},
"title": "Treatment",
"externalEnum": "product_treatment"
},
"originCountry": {
"type": "string",
"description": "Country of origin of the food/product (ISO 3166-1-alpha-2 country code)",
"title": "Country of origin",
"externalEnum": "country"
},
"originArea": {
"type": "string",
"description": "Area of origin of the food/product (Nomenclature of territorial units for statistics – NUTS – coding system valid only for EEA and Switzerland).",
"title": "Area of origin",
"externalEnum": "region"
},
"fisheriesArea": {
"type": "string",
"description": "Fisheries or aquaculture area specifying the origin of the sample (FAO Fisheries areas).",
"title": "Fisheries area",
"externalEnum": "fish_area"
},
"productionDate": {
"type": "string",
"description": "Date of production of food/product",
"format": "date",
"title": "Production date"
},
"expiryDate": {
"type": "string",
"description": "Expiry date of food/product",
"format": "date",
"title": "Expiration date"
}
},
"required": [
"name",
"unit"
]
}
},
"hazard": {
"type": "array",
"items": {
"type": "object",
"properties": {
"type": {
"type": "string",
"description": "General classification of the hazard for which the model or data applies",
"title": "Hazard type",
"externalEnum": "hazard_type"
},
"name": {
"type": "string",
"description": "Name of the hazard (agent, contaminant, chemical) for which the data or model applies",
"title": "Hazard name",
"externalEnum": "hazard"
},
"description": {
"type": "string",
"description": "Description of the hazard for which the model or data applies",
"format": "long-text",
"title": "Description"
},
"unit": {
"type": "string",
"description": "Unit of the hazard for which the model or data applies",
"title": "Unit",
"externalEnum": "unit"
},
"adverseEffect": {
"type": "string",
"description": "Adverse effect induced by hazard about morbidity, mortality, and etcetera",
"title": "Adverse effect"
},
"sourceOfContamination": {
"type": "string",
"description": "rigin of the contamination, source",
"title": "Source of contamination"
},
"benchmarkDose": {
"type": "string",
"description": "A dose or concentration that produces a predetermined change in response rate of an adverse effect (called the benchmark response or BMR) compared to background",
"title": "Benchmark Dose (BMD)"
},
"maximumResidueLimit": {
"type": "string",
"description": "International regulations and permissible maximum residue levels in food and drinking water",
"title": "Maximum Residue Limit (MRL)"
},
"noObservedAdverseAffectLevel": {
"type": "string",
"description": "Level of exposure of an organism, found by experiment or observation, at which there is no biologically or statistically significant increase in the frequency or severity of any adverse effects in the exposed population when compared to its appropriate control",
"title": "No Observed Adverse Affect Level (NOAEL)"
},
"lowestObservedAdverseAffectLevel": {
"type": "string",
"description": "Lowest concentration or amount of a substance found by experiment or observation that causes an adverse alteration of morphology, function, capacity, growth, development, or lifespan of a target organism distinguished from normal organisms of the same species under defined conditions of exposure",
"title": "Lowest Observed Adverse Effect Level (LOAEL)"
},
"acceptableOperatorsExposureLevel": {
"type": "string",
"description": "Maximum amount of active substance to which the operator may be exposed without any adverse health effects. The AOEL is expressed as milligrams of the chemical per kilogram body weight of the operator",
"title": "Acceptable Operator Exposure Level (AOEL)"
},
"acuteReferenceDose": {
"type": "string",
"description": "An estimate (with uncertainty spanning perhaps an order of magnitude) of a daily oral exposure for an acute duration (24 hours or less) to the human population (including sensitive subgroups) that is likely to be without an appreciable risk of deleterious effects during a lifetime",
"title": "Acute Reference Dose (ARfD)"
},
"acceptableDailyIntake": {
"type": "string",
"description": "Measure of amount of a specific substance in food or in drinking water tahta can be ingested (orally) on a daily basis over a lifetime without an appreciable health risk",
"title": "Acceptable Daily Intake (ADI)"
},
"indSum": {
"type": "string",
"description": "Define if the parameter reported is an individual residue/analyte, a summed residue definition or part of a sum a summed residue definition",
"title": "Individual or Summed Hazard",
"externalEnum": "ind_sum"
}
},
"required": [
"name"
]
}
},
"populationGroup": {
"type": "array",
"items": {
"type": "object",
"properties": {
"name": {
"type": "string",
"description": "Name of the population for which the model or data applies",
"title": "Population name"
},
"targetPopulation": {
"type": "string",
"description": "Population of individual that we are interested in describing and making statistical inferences about",
"title": "Target population"
},
"populationSpan": {
"type": "array",
"description": "Temporal information on the exposure duration",
"items": {
"type": "string"
},
"title": "Population span (years)"
},
"populationDescription": {
"type": "array",
"description": "Description of the population for which the model applies (demographic and socio-economic characteristics for example). Background information that are needed in the data analysis phase, size of household, education level, employment status, professional category, ethnicity, etc.",
"items": {
"type": "string"
},
"title": "Description"
},
"populationAge": {
"type": "array",
"description": "Description of the range of age or group of age",
"items": {
"type": "string"
},
"title": "Population age"
},
"populationGender": {
"type": "string",
"description": "Description of the percentage of gender",
"title": "Population gender"
},
"bmi": {
"type": "array",
"description": "Description of the range of BMI or class of BMI or BMI mean",
"items": {
"type": "string"
},
"title": "BMI"
},
"specialDietGroups": {
"type": "array",
"description": "Description of sub-population with special diets (vegetarians, diabetics, group following special ethnic diets)",
"items": {
"type": "string"
},
"title": "Special diet groups"
},
"patternConsumption": {
"type": "array",
"description": "Description of the consumption of different food items, frequency, portion size",
"items": {
"type": "string"
},
"title": "Consumption pattern"
},
"region": {
"type": "array",
"description": "Spatial information (area) on which the population group of the model or data applies",
"items": {
"type": "string"
},
"title": "Region",
"externalEnum": "region"
},
"country": {
"type": "array",
"description": "Country on which the population group of the model or data applies",
"items": {
"type": "string"
},
"title": "Country",
"externalEnum": "country"
},
"populationRiskFactor": {
"type": "array",
"description": "Population risk factor that may influence the outcomes of the study, confounder should be included",
"items": {
"type": "string"
},
"title": "Risk and population factors"
},
"season": {
"type": "array",
"description": "Distribution of surveyed people according to the season (influence consumption pattern)",
"items": {
"type": "string"
},
"title": "Season"
}
},
"required": [
"name"
]
}
},
"generalComment": {
"type": "string",
"description": "General comments on the scope of the study, data or model",
"format": "long-text",
"title": "General comment"
},
"temporalInformation": {
"type": "string",
"description": "Temporal information on which the model or data applies / An interval of time that is named or defined by its start and end dates (period of study)",
"format": "long-text",
"title": "Temporal information"
},
"spatialInformation": {
"type": "array",
"description": "Spatial information (area) on which the model or data applies",
"items": {
"type": "string"
},
"title": "Spatial information"
}
}
},
"dataBackground": {
"type": "object",
"properties": {
"study": {
"type": "object",
"properties": {
"identifier": {
"type": "string",
"description": "A user defined identifier for the study",
"title": "Study identifier"
},
"title": {
"type": "string",
"description": "A title for the study",
"format": "long-text",
"title": "Study title"
},
"description": {
"type": "string",
"description": "A brief description of the study aims",
"format": "long-text",
"title": "Study description"
},
"designType": {
"type": "string",
"description": "The type of study design being employed",
"title": "Design type"
},
"assayMeasurementType": {
"type": "string",
"description": "The measurement being observed in this assay",
"title": "Assay measurement type"
},
"assayTechnologyType": {
"type": "string",
"description": "The technology being employed to observe this measurement",
"title": "Assay technology type",
"externalEnum": "technology_type"
},
"assayTechnologyPlatform": {
"type": "string",
"description": "The technology platform used",
"title": "Assay technology platform"
},
"accreditationProcedureForTheAssayTechnology": {
"type": "string",
"description": "Accreditation procedure for the analytical method used",
"title": "Accreditation procedure for assay",
"externalEnum": "accreditation_procedure"
},
"protocolName": {
"type": "string",
"description": "The name of the protocol, e.g.Extraction Protocol",
"title": "Protocol name"
},
"protocolType": {
"type": "string",
"description": "The type of the protocol, preferably coming from an Ontology, e.g. Extraction Protocol",
"title": "Protocol type"
},
"protocolDescription": {
"type": "string",
"description": "A description of the protocol",
"format": "long-text",
"title": "Protocol description"
},
"protocolURI": {
"type": "string",
"description": "A URI to link out to a publication, web page, etc. describing the protocol",
"title": "Protocol URI"
},
"protocolVersion": {
"type": "string",
"description": "The version of the protocol used, where applicable.",
"title": "Protocol version"
},
"protocolParametersName": {
"type": "string",
"description": "The parameters used when executing this protocol",
"title": "Parameters names"
},
"protocolComponentsName": {
"type": "string",
"description": "The names of the components used when carrying out this protocol",
"title": "Components names"
},
"protocolComponentsType": {
"type": "string",
"description": "Description",
"title": "Protocol components type"
}
},
"required": [
"title"
]
},
"studySample": {
"type": "array",
"items": {
"type": "object",
"properties": {
"sampleName": {
"type": "string",
"description": "An unambiguous ID given to the samples used in the assay",
"title": "Name"
},
"protocolOfSampleCollection": {
"type": "string",
"description": "Additional protocol for sample and sample collection. Corresponds to the Protocol REF in ISA",
"title": "Protocol of sample collection"
},
"samplingStrategy": {
"type": "string",
"description": "Sampling strategy (ref. EUROSTAT - Typology of sampling strategy, version of July 2009)",
"title": "Sampling strategy",
"externalEnum": "sampling_strategy"
},
"typeOfSamplingProgram": {
"type": "string",
"description": "Indicate the type of programm for which the samples have been collected",
"title": "Type of sampling program",
"externalEnum": "sampling_program"
},
"samplingMethod": {
"type": "string",
"description": "Sampling method used to take the sample",
"title": "Sampling method",
"externalEnum": "sampling_method"
},
"samplingPlan": {
"type": "string",
"description": "Description of data collection technique: stratified or complex sampling (several stages)",
"title": "Sampling plan"
},
"samplingWeight": {
"type": "string",
"description": "Description of the method employed to compute sampling weight (nonresponse-adjusted weight)",
"title": "Sampling weight"
},
"samplingSize": {
"type": "string",
"description": "Number of units, full participants, partial participants, eligibles, not eligible, unresolved (eligibility status not resolved)",
"title": "Sampling size"
},
"lotSizeUnit": {
"type": "string",
"description": "Unit in which the lot size is expressed",
"title": "Lot size unit"
},
"samplingPoint": {
"type": "string",
"description": "Point in the food chain where the sample was taken. (Doc. ESTAT/F5/ES/155 “Data dictionary of activities of the establishments”)",
"title": "Sampling point",
"externalEnum": "sampling_point"
}
},
"required": [
"sampleName",
"protocolOfSampleCollection",
"samplingPlan",
"samplingWeight",
"samplingSize"
]
}
},
"dietaryAssessmentMethod": {
"type": "array",
"items": {
"type": "object",
"properties": {
"collectionTool": {
"type": "string",
"description": "Food diaries, interview, 24-hour recall interview, food propensy questionnaire, portion size measurement aids, eating outside questionnaire",
"title": "Methodological tool to collect data",
"externalEnum": "collection_tool"
},
"numberOfNonConsecutiveOneDay": {
"type": "string",
"description": "Number of non-consecutive one-day recorded",
"title": "Number of non-consecutive one-day"
},
"softwareTool": {
"type": "string",
"description": "Name of the software used to collect the data",
"title": "Dietary software tool"
},
"numberOfFoodItems": {
"type": "array",
"description": "Number of food items",
"minItems": 1,
"items": {
"type": "string"
},
"title": "Number of food items"
},
"recordTypes": {
"type": "array",
"description": "Consumption occasion, mean of consumption, quantified and described as eaten, recipes for self-made",
"minItems": 1,
"items": {
"type": "string"
},
"title": "Type of records"
},
"foodDescriptors": {
"type": "array",
"description": "Description using FoodEx2 facet",
"minItems": 1,
"items": {
"type": "string"
},
"title": "Food descriptors"
}
},
"required": [
"collectionTool",
"numberOfNonConsecutiveOneDay",
"numberOfFoodItems",
"recordTypes",
"foodDescriptors"
]
}
},
"laboratory": {
"type": "array",
"items": {
"type": "object",
"properties": {
"accreditation": {
"type": "array",
"description": "The laboratory accreditation to ISO/IEC 17025",
"minItems": 1,
"items": {
"type": "string"