realign_job_template.script

#!/bin/bash
#$ -S /bin/bash
#$ -cwd
#$ -V
#$ -M yl497@drexel.edu
#$ -P rosenPrj
#$ -l h_rt=72:00:00
#$ -l h_vmem=8G
#$ -q all.q
. /etc/profile.d/modules.sh
module load shared
module load proteus
module load sge/univa
module load gcc/4.8.1

matlab -nodisplay -nosplash -nodesktop -r "addpath ../codes; realign_besthits('uidA','uidB'); exit";
echo successful