diff --git a/Cargo.lock b/Cargo.lock index d4559d58..2aa27d18 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -1409,7 +1409,7 @@ dependencies = [ "gb-io", "itertools 0.12.0", "noodles", - "noodles-bgzf", + "noodles-bgzf 0.26.0", "num_cpus", "object_store", "pin-project", @@ -1432,7 +1432,7 @@ dependencies = [ "futures", "itertools 0.12.0", "noodles", - "noodles-bgzf", + "noodles-bgzf 0.26.0", "object_store", "tokio", ] @@ -2241,7 +2241,7 @@ dependencies = [ "noodles-bam", "noodles-bcf", "noodles-bed", - "noodles-bgzf", + "noodles-bgzf 0.25.0", "noodles-core", "noodles-cram", "noodles-csi", @@ -2265,7 +2265,7 @@ dependencies = [ "bytes", "futures", "indexmap", - "noodles-bgzf", + "noodles-bgzf 0.25.0", "noodles-core", "noodles-csi", "noodles-sam", @@ -2281,7 +2281,7 @@ dependencies = [ "byteorder", "futures", "indexmap", - "noodles-bgzf", + "noodles-bgzf 0.25.0", "noodles-core", "noodles-csi", "noodles-vcf", @@ -2308,12 +2308,24 @@ dependencies = [ "crossbeam-channel", "flate2", "futures", - "libdeflater", "pin-project-lite", "tokio", "tokio-util", ] +[[package]] +name = "noodles-bgzf" +version = "0.26.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8970db2e84adb1007377dd3988258d7a64e3fc4c05602ebf94e1f8cba207c030" +dependencies = [ + "byteorder", + "bytes", + "crossbeam-channel", + "flate2", + "libdeflater", +] + [[package]] name = "noodles-core" version = "0.12.0" @@ -2352,7 +2364,7 @@ dependencies = [ "bit-vec", "byteorder", "indexmap", - "noodles-bgzf", + "noodles-bgzf 0.25.0", "noodles-core", "tokio", ] @@ -2365,7 +2377,7 @@ checksum = "310dcfb61e8e2cafb65d9da4b329a98a390f2b570c17599a7f4639328cfb3e2c" dependencies = [ "bytes", "memchr", - "noodles-bgzf", + "noodles-bgzf 0.25.0", "noodles-core", "tokio", ] @@ -2388,7 +2400,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "fec62bd9306cce6d551c9c7075beca940aec283efd18648b6d04860b693fd092" dependencies = [ "indexmap", - "noodles-bgzf", + "noodles-bgzf 0.25.0", "noodles-core", "noodles-csi", "percent-encoding", @@ -2400,7 +2412,7 @@ version = "0.21.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "26ee8a2633a534db9a66ea03b3962054414295b5f49eaedb24176abdab8accca" dependencies = [ - "noodles-bgzf", + "noodles-bgzf 0.25.0", "noodles-core", "noodles-csi", ] @@ -2416,7 +2428,7 @@ dependencies = [ "indexmap", "lexical-core", "memchr", - "noodles-bgzf", + "noodles-bgzf 0.25.0", "noodles-core", "noodles-csi", "tokio", @@ -2431,7 +2443,7 @@ dependencies = [ "bit-vec", "byteorder", "indexmap", - "noodles-bgzf", + "noodles-bgzf 0.25.0", "noodles-core", "noodles-csi", "tokio", @@ -2446,7 +2458,7 @@ dependencies = [ "futures", "indexmap", "memchr", - "noodles-bgzf", + "noodles-bgzf 0.25.0", "noodles-core", "noodles-csi", "noodles-tabix", diff --git a/exon/exon-bam/Cargo.toml b/exon/exon-bam/Cargo.toml index 0b283f52..009b0f81 100644 --- a/exon/exon-bam/Cargo.toml +++ b/exon/exon-bam/Cargo.toml @@ -16,6 +16,6 @@ exon-common = {path = "../exon-common", version = "0.5.4"} futures = {workspace = true} itertools = "0.12.0" noodles = {workspace = true, features = ["core", "async", "bam", "sam", "bgzf"]} -noodles-bgzf = {version = "0.25.0", features = ["libdeflate"]} +noodles-bgzf = {version = "0.26.0", features = ["libdeflate"]} object_store = {workspace = true} tokio = {workspace = true} diff --git a/exon/exon-core/Cargo.toml b/exon/exon-core/Cargo.toml index adde589b..5320c579 100644 --- a/exon/exon-core/Cargo.toml +++ b/exon/exon-core/Cargo.toml @@ -31,7 +31,7 @@ futures = {workspace = true} gb-io = {version = "0.7.1", optional = true} itertools = "0.12.0" noodles = {workspace = true, features = ["bed", "tabix", "core", "async", "bcf", "vcf", "bgzf", "csi", "gtf"]} -noodles-bgzf = {version = "0.25.0", features = ["libdeflate"]} +noodles-bgzf = {version = "0.26.0", features = ["libdeflate"]} num_cpus = "1.16.0" object_store = {workspace = true, features = ["aws"]} pin-project = {version = "1.1.3", optional = true}