From 052ffbbeee17826783bcfcb62ec0b9725550c69f Mon Sep 17 00:00:00 2001 From: Trent Hauck Date: Mon, 17 Jun 2024 08:50:25 -0700 Subject: [PATCH] release: bump to version v0.25.1 --- .github/workflows/build-cli-image.yml | 2 +- CHANGELOG.md | 2 ++ Cargo.lock | 42 +++++++++++++-------------- Cargo.toml | 2 +- cz.json | 2 +- exon/exon-bam/Cargo.toml | 4 +-- exon/exon-bcf/Cargo.toml | 4 +-- exon/exon-bed/Cargo.toml | 2 +- exon/exon-bigwig/Cargo.toml | 2 +- exon/exon-cli/Cargo.toml | 2 +- exon/exon-core/Cargo.toml | 32 ++++++++++---------- exon/exon-cram/Cargo.toml | 4 +-- exon/exon-fasta/Cargo.toml | 2 +- exon/exon-fastq/Cargo.toml | 2 +- exon/exon-fcs/Cargo.toml | 2 +- exon/exon-genbank/Cargo.toml | 2 +- exon/exon-gff/Cargo.toml | 2 +- exon/exon-gtf/Cargo.toml | 2 +- exon/exon-mzml/Cargo.toml | 2 +- exon/exon-sam/Cargo.toml | 2 +- exon/exon-vcf/Cargo.toml | 2 +- 21 files changed, 60 insertions(+), 58 deletions(-) diff --git a/.github/workflows/build-cli-image.yml b/.github/workflows/build-cli-image.yml index df00b2c8..d13b9145 100644 --- a/.github/workflows/build-cli-image.yml +++ b/.github/workflows/build-cli-image.yml @@ -37,5 +37,5 @@ jobs: build-args: | CARGO_BUILD_PROFILE=release push: true - tags: public.ecr.aws/p3a4z1t3/exon-cli:latest,public.ecr.aws/p3a4z1t3/exon-cli:v0.25.0 + tags: public.ecr.aws/p3a4z1t3/exon-cli:latest,public.ecr.aws/p3a4z1t3/exon-cli:v0.25.1 platforms: linux/amd64,linux/arm64 diff --git a/CHANGELOG.md b/CHANGELOG.md index 0621062b..8422d6d3 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,7 @@ # CHANGELOG +## v0.25.1 (2024-06-17) + ## v0.25.0 (2024-06-14) ### Feat diff --git a/Cargo.lock b/Cargo.lock index 6db8d890..f6020ee8 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -2089,7 +2089,7 @@ dependencies = [ [[package]] name = "exon" -version = "0.25.0" +version = "0.25.1" dependencies = [ "arrow", "async-trait", @@ -2136,7 +2136,7 @@ dependencies = [ [[package]] name = "exon-bam" -version = "0.25.0" +version = "0.25.1" dependencies = [ "arrow", "exon-common", @@ -2150,7 +2150,7 @@ dependencies = [ [[package]] name = "exon-bcf" -version = "0.25.0" +version = "0.25.1" dependencies = [ "arrow", "exon-common", @@ -2163,7 +2163,7 @@ dependencies = [ [[package]] name = "exon-bed" -version = "0.25.0" +version = "0.25.1" dependencies = [ "arrow", "exon-common", @@ -2176,7 +2176,7 @@ dependencies = [ [[package]] name = "exon-benchmarks" -version = "0.25.0" +version = "0.25.1" dependencies = [ "clap 4.5.7", "datafusion", @@ -2189,7 +2189,7 @@ dependencies = [ [[package]] name = "exon-bigwig" -version = "0.25.0" +version = "0.25.1" dependencies = [ "arrow", "bigtools", @@ -2203,7 +2203,7 @@ dependencies = [ [[package]] name = "exon-cli" -version = "0.25.0" +version = "0.25.1" dependencies = [ "clap 4.5.7", "datafusion", @@ -2216,7 +2216,7 @@ dependencies = [ [[package]] name = "exon-common" -version = "0.25.0" +version = "0.25.1" dependencies = [ "arrow", "datafusion", @@ -2228,7 +2228,7 @@ dependencies = [ [[package]] name = "exon-cram" -version = "0.25.0" +version = "0.25.1" dependencies = [ "arrow", "coitrees", @@ -2243,7 +2243,7 @@ dependencies = [ [[package]] name = "exon-examples" -version = "0.25.0" +version = "0.25.1" dependencies = [ "arrow", "datafusion", @@ -2253,7 +2253,7 @@ dependencies = [ [[package]] name = "exon-fasta" -version = "0.25.0" +version = "0.25.1" dependencies = [ "arrow", "exon-common", @@ -2267,7 +2267,7 @@ dependencies = [ [[package]] name = "exon-fastq" -version = "0.25.0" +version = "0.25.1" dependencies = [ "arrow", "exon-common", @@ -2280,7 +2280,7 @@ dependencies = [ [[package]] name = "exon-fcs" -version = "0.25.0" +version = "0.25.1" dependencies = [ "arrow", "byteorder", @@ -2293,7 +2293,7 @@ dependencies = [ [[package]] name = "exon-genbank" -version = "0.25.0" +version = "0.25.1" dependencies = [ "arrow", "exon-common", @@ -2306,7 +2306,7 @@ dependencies = [ [[package]] name = "exon-gff" -version = "0.25.0" +version = "0.25.1" dependencies = [ "arrow", "exon-common", @@ -2320,7 +2320,7 @@ dependencies = [ [[package]] name = "exon-gtf" -version = "0.25.0" +version = "0.25.1" dependencies = [ "arrow", "exon-common", @@ -2332,7 +2332,7 @@ dependencies = [ [[package]] name = "exon-io" -version = "0.25.0" +version = "0.25.1" dependencies = [ "async-trait", "aws-config 1.5.1", @@ -2344,7 +2344,7 @@ dependencies = [ [[package]] name = "exon-mzml" -version = "0.25.0" +version = "0.25.1" dependencies = [ "arrow", "base64 0.22.1", @@ -2360,7 +2360,7 @@ dependencies = [ [[package]] name = "exon-sam" -version = "0.25.0" +version = "0.25.1" dependencies = [ "arrow", "exon-common", @@ -2373,7 +2373,7 @@ dependencies = [ [[package]] name = "exon-test" -version = "0.25.0" +version = "0.25.1" dependencies = [ "datafusion", "object_store", @@ -2381,7 +2381,7 @@ dependencies = [ [[package]] name = "exon-vcf" -version = "0.25.0" +version = "0.25.1" dependencies = [ "arrow", "exon-common", diff --git a/Cargo.toml b/Cargo.toml index 7c9bbaac..d7fe4d84 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -4,7 +4,7 @@ homepage = "https://www.wheretrue.dev/docs/exon/" license = "Apache-2.0" readme = "README.md" repository = "https://github.com/wheretrue/exon" -version = "0.25.0" +version = "0.25.1" [workspace] members = [ diff --git a/cz.json b/cz.json index b16a5920..ec3c658b 100644 --- a/cz.json +++ b/cz.json @@ -1,7 +1,7 @@ { "commitizen": { "name": "cz_conventional_commits", - "version": "0.25.0", + "version": "0.25.1", "tag_format": "v$version", "version_files": [ "Cargo.toml", diff --git a/exon/exon-bam/Cargo.toml b/exon/exon-bam/Cargo.toml index b7dfe781..7daf76ca 100644 --- a/exon/exon-bam/Cargo.toml +++ b/exon/exon-bam/Cargo.toml @@ -10,8 +10,8 @@ version = { workspace = true } [dependencies] arrow = { workspace = true } -exon-common = { path = "../exon-common", version = "0.25.0" } -exon-sam = { path = "../exon-sam", version = "0.25.0" } +exon-common = { path = "../exon-common", version = "0.25.1" } +exon-sam = { path = "../exon-sam", version = "0.25.1" } futures = { workspace = true } itertools = "0.13" noodles = { workspace = true, features = [ diff --git a/exon/exon-bcf/Cargo.toml b/exon/exon-bcf/Cargo.toml index fa8b2449..14d26f70 100644 --- a/exon/exon-bcf/Cargo.toml +++ b/exon/exon-bcf/Cargo.toml @@ -12,8 +12,8 @@ version.workspace = true [dependencies] arrow = { workspace = true } -exon-common = { path = "../exon-common", version = "0.25.0" } -exon-vcf = { path = "../exon-vcf", version = "0.25.0" } +exon-common = { path = "../exon-common", version = "0.25.1" } +exon-vcf = { path = "../exon-vcf", version = "0.25.1" } futures = { workspace = true } noodles = { workspace = true, features = ["core", "async", "bcf", "bgzf"] } object_store = { workspace = true } diff --git a/exon/exon-bed/Cargo.toml b/exon/exon-bed/Cargo.toml index d8706945..dc3aa2fd 100644 --- a/exon/exon-bed/Cargo.toml +++ b/exon/exon-bed/Cargo.toml @@ -12,7 +12,7 @@ version.workspace = true [dependencies] arrow = { workspace = true } -exon-common = { path = "../exon-common", version = "0.25.0" } +exon-common = { path = "../exon-common", version = "0.25.1" } futures = { workspace = true } noodles = { workspace = true, features = ["bed", "core"] } object_store = { workspace = true } diff --git a/exon/exon-bigwig/Cargo.toml b/exon/exon-bigwig/Cargo.toml index f14197ec..4857ebfb 100644 --- a/exon/exon-bigwig/Cargo.toml +++ b/exon/exon-bigwig/Cargo.toml @@ -10,7 +10,7 @@ version.workspace = true [dependencies] arrow = { workspace = true } -exon-common = { path = "../exon-common", version = "0.25.0" } +exon-common = { path = "../exon-common", version = "0.25.1" } noodles = { workspace = true, features = ["core"] } futures = { workspace = true } bigtools = "0.4.3" diff --git a/exon/exon-cli/Cargo.toml b/exon/exon-cli/Cargo.toml index 964902a5..0d62ed7e 100644 --- a/exon/exon-cli/Cargo.toml +++ b/exon/exon-cli/Cargo.toml @@ -13,7 +13,7 @@ version.workspace = true datafusion-cli = { version = "39" } clap = { version = "4", features = ["derive", "cargo"] } datafusion = { workspace = true } -exon = { path = "../exon-core", version = "0.25.0", features = ["default"] } +exon = { path = "../exon-core", version = "0.25.1", features = ["default"] } tokio = { workspace = true } tracing = { workspace = true } tracing-subscriber = { version = "0.3.18", features = ["env-filter"] } diff --git a/exon/exon-core/Cargo.toml b/exon/exon-core/Cargo.toml index 5d267108..9df1418c 100644 --- a/exon/exon-core/Cargo.toml +++ b/exon/exon-core/Cargo.toml @@ -15,22 +15,22 @@ arrow = { workspace = true } async-trait = { workspace = true } bytes = "1.6.0" datafusion = { workspace = true } -exon-bam = { path = "../exon-bam", version = "0.25.0" } -exon-bcf = { path = "../exon-bcf", version = "0.25.0" } -exon-bed = { path = "../exon-bed", version = "0.25.0" } -exon-cram = { path = "../exon-cram", version = "0.25.0" } -exon-common = { path = "../exon-common", version = "0.25.0" } -exon-fasta = { path = "../exon-fasta", version = "0.25.0" } -exon-fastq = { path = "../exon-fastq", version = "0.25.0" } -exon-fcs = { path = "../exon-fcs", version = "0.25.0", optional = true } -exon-genbank = { path = "../exon-genbank", version = "0.25.0", optional = true } -exon-gff = { path = "../exon-gff", version = "0.25.0" } -exon-gtf = { path = "../exon-gtf", version = "0.25.0" } -exon-io = { path = "../exon-io", version = "0.25.0" } -exon-mzml = { path = "../exon-mzml", version = "0.25.0", optional = true } -exon-sam = { path = "../exon-sam", version = "0.25.0" } -exon-vcf = { path = "../exon-vcf", version = "0.25.0" } -exon-bigwig = { path = "../exon-bigwig", version = "0.25.0" } +exon-bam = { path = "../exon-bam", version = "0.25.1" } +exon-bcf = { path = "../exon-bcf", version = "0.25.1" } +exon-bed = { path = "../exon-bed", version = "0.25.1" } +exon-cram = { path = "../exon-cram", version = "0.25.1" } +exon-common = { path = "../exon-common", version = "0.25.1" } +exon-fasta = { path = "../exon-fasta", version = "0.25.1" } +exon-fastq = { path = "../exon-fastq", version = "0.25.1" } +exon-fcs = { path = "../exon-fcs", version = "0.25.1", optional = true } +exon-genbank = { path = "../exon-genbank", version = "0.25.1", optional = true } +exon-gff = { path = "../exon-gff", version = "0.25.1" } +exon-gtf = { path = "../exon-gtf", version = "0.25.1" } +exon-io = { path = "../exon-io", version = "0.25.1" } +exon-mzml = { path = "../exon-mzml", version = "0.25.1", optional = true } +exon-sam = { path = "../exon-sam", version = "0.25.1" } +exon-vcf = { path = "../exon-vcf", version = "0.25.1" } +exon-bigwig = { path = "../exon-bigwig", version = "0.25.1" } futures = { workspace = true } itertools = "0.13" noodles = { workspace = true, features = [ diff --git a/exon/exon-cram/Cargo.toml b/exon/exon-cram/Cargo.toml index 019c31a3..05ec0e55 100644 --- a/exon/exon-cram/Cargo.toml +++ b/exon/exon-cram/Cargo.toml @@ -13,8 +13,8 @@ version.workspace = true [dependencies] arrow = { workspace = true } coitrees = "0.4.0" -exon-common = { path = "../exon-common", version = "0.25.0" } -exon-sam = { path = "../exon-sam", version = "0.25.0" } +exon-common = { path = "../exon-common", version = "0.25.1" } +exon-sam = { path = "../exon-sam", version = "0.25.1" } futures = { workspace = true } noodles = { workspace = true, features = ["core", "async", "cram", "fasta"] } object_store = { workspace = true } diff --git a/exon/exon-fasta/Cargo.toml b/exon/exon-fasta/Cargo.toml index bd059dfd..8b2236ab 100644 --- a/exon/exon-fasta/Cargo.toml +++ b/exon/exon-fasta/Cargo.toml @@ -12,7 +12,7 @@ version.workspace = true [dependencies] arrow = { workspace = true } -exon-common = { path = "../exon-common", version = "0.25.0" } +exon-common = { path = "../exon-common", version = "0.25.1" } futures = { workspace = true } noodles = { workspace = true, features = ["core", "async", "fasta"] } object_store = { workspace = true } diff --git a/exon/exon-fastq/Cargo.toml b/exon/exon-fastq/Cargo.toml index bdc806be..5f1a93c1 100644 --- a/exon/exon-fastq/Cargo.toml +++ b/exon/exon-fastq/Cargo.toml @@ -12,7 +12,7 @@ version.workspace = true [dependencies] arrow = { workspace = true } -exon-common = { path = "../exon-common", version = "0.25.0" } +exon-common = { path = "../exon-common", version = "0.25.1" } futures = { workspace = true } noodles = { workspace = true, features = ["async", "fastq"] } object_store = { workspace = true } diff --git a/exon/exon-fcs/Cargo.toml b/exon/exon-fcs/Cargo.toml index efc2d4bd..0950f186 100644 --- a/exon/exon-fcs/Cargo.toml +++ b/exon/exon-fcs/Cargo.toml @@ -13,7 +13,7 @@ version.workspace = true [dependencies] arrow = { workspace = true } byteorder = { version = "1.5.0" } -exon-common = { path = "../exon-common", version = "0.25.0" } +exon-common = { path = "../exon-common", version = "0.25.1" } futures = { workspace = true } object_store = { workspace = true } tokio = { workspace = true, features = ["fs"] } diff --git a/exon/exon-genbank/Cargo.toml b/exon/exon-genbank/Cargo.toml index b0ef1321..0e477f8b 100644 --- a/exon/exon-genbank/Cargo.toml +++ b/exon/exon-genbank/Cargo.toml @@ -12,7 +12,7 @@ version.workspace = true [dependencies] arrow = { workspace = true } -exon-common = { path = "../exon-common", version = "0.25.0" } +exon-common = { path = "../exon-common", version = "0.25.1" } futures = { workspace = true } gb-io = { version = "0.7.1" } object_store = { workspace = true } diff --git a/exon/exon-gff/Cargo.toml b/exon/exon-gff/Cargo.toml index 05373126..90b78900 100644 --- a/exon/exon-gff/Cargo.toml +++ b/exon/exon-gff/Cargo.toml @@ -12,7 +12,7 @@ version.workspace = true [dependencies] arrow = { workspace = true } -exon-common = { path = "../exon-common", version = "0.25.0" } +exon-common = { path = "../exon-common", version = "0.25.1" } futures = { workspace = true } noodles = { workspace = true, features = ["core", "gff", "async"] } object_store = { workspace = true } diff --git a/exon/exon-gtf/Cargo.toml b/exon/exon-gtf/Cargo.toml index fc4dffa9..ccc1d214 100644 --- a/exon/exon-gtf/Cargo.toml +++ b/exon/exon-gtf/Cargo.toml @@ -12,7 +12,7 @@ version.workspace = true [dependencies] arrow = { workspace = true } -exon-common = { path = "../exon-common", version = "0.25.0" } +exon-common = { path = "../exon-common", version = "0.25.1" } futures = { workspace = true } noodles = { workspace = true, features = ["gtf"] } object_store = { workspace = true } diff --git a/exon/exon-mzml/Cargo.toml b/exon/exon-mzml/Cargo.toml index d51dc984..e9465af0 100644 --- a/exon/exon-mzml/Cargo.toml +++ b/exon/exon-mzml/Cargo.toml @@ -14,7 +14,7 @@ version.workspace = true arrow = { workspace = true } base64 = { version = "0.22" } byteorder = { version = "1.5.0" } -exon-common = { path = "../exon-common", version = "0.25.0" } +exon-common = { path = "../exon-common", version = "0.25.1" } flate2 = { version = "1.0.30" } futures = { workspace = true } object_store = { workspace = true } diff --git a/exon/exon-sam/Cargo.toml b/exon/exon-sam/Cargo.toml index 7f015edb..1b0fed41 100644 --- a/exon/exon-sam/Cargo.toml +++ b/exon/exon-sam/Cargo.toml @@ -10,7 +10,7 @@ version = { workspace = true } [dependencies] arrow = { workspace = true } -exon-common = { path = "../exon-common", version = "0.25.0" } +exon-common = { path = "../exon-common", version = "0.25.1" } futures = { workspace = true } itertools = "0.13" noodles = { workspace = true, features = [ diff --git a/exon/exon-vcf/Cargo.toml b/exon/exon-vcf/Cargo.toml index 942cfdf2..ee809a0b 100644 --- a/exon/exon-vcf/Cargo.toml +++ b/exon/exon-vcf/Cargo.toml @@ -12,7 +12,7 @@ version.workspace = true [dependencies] arrow = { workspace = true } -exon-common = { path = "../exon-common", version = "0.25.0" } +exon-common = { path = "../exon-common", version = "0.25.1" } futures = { workspace = true } noodles = { workspace = true, features = ["core", "async", "vcf", "bgzf"] } object_store = { workspace = true }