From 65e39dce03f78b55bb81f7cafaaae667706bf28f Mon Sep 17 00:00:00 2001
From: vcellmike <blinov@uchc.edu>
Date: Tue, 4 Feb 2025 17:20:16 -0500
Subject: [PATCH] Change API to the new VCell v0 API

The old API was moved.
---
 app.js               |  6 +++---
 views/model.hbs      | 18 +++++++++---------
 views/printModel.hbs |  2 +-
 3 files changed, 13 insertions(+), 13 deletions(-)

diff --git a/app.js b/app.js
index 158abb4..0a77b65 100644
--- a/app.js
+++ b/app.js
@@ -296,7 +296,7 @@ async function getModelList(termMap) {
 
     //create link and fetch from API
     const api_url =
-      "https://vcellapi.cam.uchc.edu/biomodel?bmName=" + termMap["bmName"] + "&bmId=" + termMap["bmId"] + "&category=" + termMap["category"] + "&owner=" + termMap["owner"] + "&savedLow=" + termMap["savedLow"] + "&savedHigh=" + termMap["savedHigh"] + "&startRow=" + APIrow + "&maxRows=" + termMap['maxModels'] + "&orderBy=" + termMap["orderBy"];
+      "https://vcell.cam.uchc.edu/api/v0/biomodel?bmName=" + termMap["bmName"] + "&bmId=" + termMap["bmId"] + "&category=" + termMap["category"] + "&owner=" + termMap["owner"] + "&savedLow=" + termMap["savedLow"] + "&savedHigh=" + termMap["savedHigh"] + "&startRow=" + APIrow + "&maxRows=" + termMap['maxModels'] + "&orderBy=" + termMap["orderBy"];
     const fetch_response = await fetch(api_url);
     json = await fetch_response.json();
   }
@@ -423,7 +423,7 @@ app.get("/testCuratedList/:search", async (req, res) => {
 // main Dashboard for dynamic models selected from curated list page
 app.get("/curatedList/model/:name", (req, res) => {
   const api_url =
-    'https://vcellapi.cam.uchc.edu/biomodel/' + req.params.name + '/biomodel.vcml';
+    'https://vcell.cam.uchc.edu/api/v0/biomodel/' + req.params.name + '/biomodel.vcml';
   var parser = new xml2js.Parser();
   fetch(api_url).then(function(response) {
     return response.text().then(function(text) {
@@ -479,7 +479,7 @@ app.get("/test/:name", (req, res) => {
 app.get("/curatedList/printModel/:name", (req, res) => {
   modelName = req.params.name;
   const api_url =
-    'https://vcellapi.cam.uchc.edu/biomodel/' + modelName + '/biomodel.vcml';
+    'https://vcell.cam.uchc.edu/api/v0/biomodel/' + modelName + '/biomodel.vcml';
   var parser = new xml2js.Parser();
   fetch(api_url).then(function(response) {
     return response.text().then(function(text) {
diff --git a/views/model.hbs b/views/model.hbs
index 34b8ec1..6d5b772 100644
--- a/views/model.hbs
+++ b/views/model.hbs
@@ -163,7 +163,7 @@
                 <div class="reactionDiagram" id="diagram">
                     {{#each data.vcml.BioModel}}
                     {{#each this.Version}}
-                    <img class="model-page-diagram" src="https://vcellapi.cam.uchc.edu/biomodel/{{this.$.KeyValue}}/diagram"
+                    <img class="model-page-diagram" src="https://vcell.cam.uchc.edu/api/v0/biomodel/{{this.$.KeyValue}}/diagram"
                         alt="reactionDiagram" draggable="false" />
                     {{/each}}
                     {{/each}}
@@ -1440,7 +1440,7 @@
                             <tr>
                                 <td>Virtual Cell Markup Language</td>
                                 <td data-label="File" class="File">
-                                  <a href="https://vcellapi.cam.uchc.edu/biomodel/{{this.Version.[0].$.KeyValue}}/biomodel.vcml">
+                                  <a href="https://vcell.cam.uchc.edu/api/v0/biomodel/{{this.Version.[0].$.KeyValue}}/biomodel.vcml">
                                     VCML File
                                   </a>
                                 </td>
@@ -1448,7 +1448,7 @@
                             <tr>
                                 <td>PDF Report</td>
                                 <td data-label="File" class="File">
-                                  <a href="https://vcellapi.cam.uchc.edu/biomodel/{{this.Version.[0].$.KeyValue}}/biomodel.pdf">
+                                  <a href="https://vcell.cam.uchc.edu/api/v0/biomodel/{{this.Version.[0].$.KeyValue}}/biomodel.pdf">
                                     Report
                                   </a>
                                 </td>
@@ -1457,7 +1457,7 @@
                                 <td>COMBINE Archive</td>
                                 <td data-label="File" class="File">
                                   <a href=
-                                    "https://vcellapi.cam.uchc.edu/biomodel/
+                                    "https://vcell.cam.uchc.edu/api/v0/biomodel/
                                     {{~this.Version.[0].$.KeyValue~}}
                                     /biomodel.omex?appname={{convertSpace this.SimulationSpec.[0].$.Name}}"
                                   >
@@ -1469,7 +1469,7 @@
                                 <td>SEDML</td>
                                 <td data-label="File" class="File">
                                   <a href=
-                                    "https://vcellapi.cam.uchc.edu/biomodel/
+                                    "https://vcell.cam.uchc.edu/api/v0/biomodel/
                                     {{~this.Version.[0].$.KeyValue~}}
                                     /biomodel.sedml?appname={{convertSpace this.SimulationSpec.[0].$.Name}}"
                                   >
@@ -1499,7 +1499,7 @@
                                 <td data-label="File" class="File">
                                   {{#each SimulationSpec}}
                                   <a href=
-                                    "https://vcellapi.cam.uchc.edu/biomodel/
+                                    "https://vcell.cam.uchc.edu/api/v0/biomodel/
                                     {{~../this.Version.[0].$.KeyValue~}}
                                     /biomodel.bngl?appname={{convertSpace this.$.Name}}"
                                   >
@@ -1516,7 +1516,7 @@
                                 <td data-label="File" class="File">
                                   {{#each SimulationSpec}}
                                   <a href=
-                                    "https://vcellapi.cam.uchc.edu/biomodel/
+                                    "https://vcell.cam.uchc.edu/api/v0/biomodel/
                                     {{~../this.Version.[0].$.KeyValue~}}
                                     /biomodel.sbml?appname={{convertSpace this.$.Name}}"
                                   >
@@ -1533,7 +1533,7 @@
                                 <td data-label="File" class="File">
                                   {{#each SimulationSpec}}
                                   <a href=
-                                    "https://vcellapi.cam.uchc.edu/biomodel/
+                                    "https://vcell.cam.uchc.edu/api/v0/biomodel/
                                     {{~../this.Version.[0].$.KeyValue~}}
                                     /biomodel.m?appname={{convertSpace this.$.Name}}"
                                   >
@@ -1550,7 +1550,7 @@
                                 <td data-label="File" class="File">
                                   {{#each SimulationSpec}}
                                   <a href=
-                                    "https://vcellapi.cam.uchc.edu/biomodel/
+                                    "https://vcell.cam.uchc.edu/api/v0/biomodel/
                                     {{~../this.Version.[0].$.KeyValue~}}
                                     /biomodel.xml?appname={{convertSpace this.$.Name}}"
                                   >
diff --git a/views/printModel.hbs b/views/printModel.hbs
index 3097b12..8ff34ad 100644
--- a/views/printModel.hbs
+++ b/views/printModel.hbs
@@ -14,7 +14,7 @@
     <h2 class="sectionTitle">Reaction Diagram</h2>
     {{#each data.vcml.BioModel}}
     {{#each this.Version}}
-    <img class="image-zoom-available" src="https://vcellapi.cam.uchc.edu/biomodel/{{this.$.KeyValue}}/diagram"
+    <img class="image-zoom-available" src="https://vcell.cam.uchc.edu/api/v0/biomodel/{{this.$.KeyValue}}/diagram"
         alt="reactionDiagram" draggable="false" />
     {{/each}}
     {{/each}}