Merge branch 'aux_cpl_hist_daily' of github.com:kdraeder/CMEPS into a…

…ux_cpl_hist_daily

Because git told me to do it.
I'm trying to set up a remote to my new fork of CMEPS
in order to push changes on the aux_cpl_hist_daily branch.

.github/pull_request_template.md

@@ -11,39 +11,6 @@ Are changes expected to change answers? (specify if bfb, different at roundoff,
 Any User Interface Changes (namelist or namelist defaults changes)?
 
 ### Testing performed
+Please describe the tests along with the target model and machine(s) 
+If possible, please also added hashes that were used in the testing
 
-Testing performed if application target is CESM:
-- [ ] (recommended) CIME_DRIVER=nuopc scripts_regression_tests.py
-   - machines:
-   - details (e.g. failed tests):
-- [ ] (recommended) CESM testlist_drv.xml
-   - machines and compilers:
-   - details (e.g. failed tests):
-- [ ] (optional) CESM prealpha test
-   - machines and compilers
-   - details (e.g. failed tests):
-- [ ] (other) please described in detail
-   - machines and compilers
-   - details (e.g. failed tests):
-
-Testing performed if application target is UFS-coupled:
-- [ ] (recommended) UFS-coupled testing
-   - description:
-   - details (e.g. failed tests):
-
-Testing performed if application target is UFS-HAFS:
-- [ ] (recommended) UFS-HAFS testing
-   - description:
-   - details (e.g. failed tests):
-
-### Hashes used for testing:
-
-- [ ] CESM:
-  - repository to check out: https://github.com/ESCOMP/CESM.git
-  - branch/hash:
-- [ ] UFS-coupled, then umbrella repostiory to check out and associated hash:
-  - repository to check out:
-  - branch/hash:
-- [ ] UFS-HAFS, then umbrella repostiory to check out and associated hash:
-  - repository to check out:
-  - branch/hash:

cesm/driver/esm.F90

@@ -796,7 +796,7 @@ subroutine esm_init_pelayout(driver, maxthreads, rc)
 #ifndef NO_MPI2
     use mpi          , only : MPI_COMM_NULL, mpi_comm_size
 #endif
-    use mct_mod      , only : mct_world_init
+    use m_MCTWorld   , only : mct_world_init => init
 
 #ifdef MED_PRESENT
     use med_internalstate_mod , only : med_id

cime_config/buildnml

@@ -125,17 +125,13 @@ def _create_drv_namelists(case, infile, confdir, nmlgen, files):
     elif case.get_value("RUN_TYPE") == "branch":
         config["run_type"] = "branch"
 
+    config['wav_ice_coupling'] = config['COMP_WAV'] == 'ww3dev' and config['COMP_ICE'] == 'cice'
+
     # ----------------------------------------------------
     # Initialize namelist defaults
     # ----------------------------------------------------
     nmlgen.init_defaults(infile, config, skip_default_for_groups=["modelio"])
 
-    # --------------------------------
-    # Set default wav-ice coupling (assumes cice6 as the ice component
-    # --------------------------------
-    if case.get_value("COMP_WAV") == "ww3dev" and case.get_value("COMP_ICE") == "cice":
-        nmlgen.add_default("wavice_coupling", value=".true.")
-
     # --------------------------------
     # Overwrite: set brnch_retain_casename
     # --------------------------------

cime_config/config_component.xml

@@ -1361,87 +1361,6 @@
   </entry>
 
   <!--- map files -->
-  <!--- comment out map type for now, tcraig 3/25/13 -->
-
-  <entry id="ATM2OCN_FMAPNAME">
-    <type>char</type>
-    <default_value>idmap</default_value>
-    <group>run_domain</group>
-    <file>env_run.xml</file>
-    <desc>atm2ocn flux mapping file</desc>
-  </entry>
-
-  <entry id="ATM2OCN_SMAPNAME">
-    <type>char</type>
-    <default_value>idmap</default_value>
-    <group>run_domain</group>
-    <file>env_run.xml</file>
-    <desc>atm2ocn state mapping file</desc>
-  </entry>
-
-  <entry id="ATM2OCN_VMAPNAME">
-    <type>char</type>
-    <default_value>idmap</default_value>
-    <group>run_domain</group>
-    <file>env_run.xml</file>
-    <desc>atm2ocn vector mapping file</desc>
-  </entry>
-
-  <entry id="ATM2LND_FMAPNAME">
-    <type>char</type>
-    <default_value>idmap</default_value>
-    <group>run_domain</group>
-    <file>env_run.xml</file>
-    <desc>atm2lnd flux mapping file</desc>
-  </entry>
-
-  <entry id="ATM2LND_SMAPNAME">
-    <type>char</type>
-    <default_value>idmap</default_value>
-    <group>run_domain</group>
-    <file>env_run.xml</file>
-    <desc>atm2lnd state mapping file</desc>
-  </entry>
-
-  <entry id="ATM2WAV_SMAPNAME">
-    <type>char</type>
-    <default_value>idmap</default_value>
-    <group>run_domain</group>
-    <file>env_run.xml</file>
-    <desc>atm2wav state mapping file</desc>
-  </entry>
-
-  <entry id="OCN2ATM_FMAPNAME">
-    <type>char</type>
-    <default_value>idmap</default_value>
-    <group>run_domain</group>
-    <file>env_run.xml</file>
-    <desc>ocn2atm flux mapping file</desc>
-  </entry>
-
-  <entry id="OCN2ATM_SMAPNAME">
-    <type>char</type>
-    <default_value>idmap</default_value>
-    <group>run_domain</group>
-    <file>env_run.xml</file>
-    <desc>ocn2atm state mapping file</desc>
-  </entry>
-
-  <entry id="LND2ATM_FMAPNAME">
-    <type>char</type>
-    <default_value>idmap</default_value>
-    <group>run_domain</group>
-    <file>env_run.xml</file>
-    <desc>lnd2atm flux mapping file</desc>
-  </entry>
-
-  <entry id="LND2ATM_SMAPNAME">
-    <type>char</type>
-    <default_value>idmap</default_value>
-    <group>run_domain</group>
-    <file>env_run.xml</file>
-    <desc>lnd2atm state mapping file</desc>
-  </entry>
 
   <entry id="LND2ROF_FMAPNAME">
     <type>char</type>

cime_config/config_component_cesm.xml

@@ -108,12 +108,15 @@
       <value compset="_CAM">CO2A</value>
       <value compset="_DATM">none</value>
       <value compset="_DATM%CPLHIST.+POP\d">CO2A</value>
+      <value compset="_DATM%CPLHIST.+BLOM%ECO">CO2A</value>
       <value compset="^OMIP_DATM%IAF.*_POP2%[^_]*ECO">CO2A</value>
       <value compset="^OMIP_DATM%JRA.*_POP2%[^_]*ECO">CO2A</value>
       <value compset="HIST.*_DATM.*_CLM">CO2A</value>
       <value compset="SSP.*_DATM.*_CLM">CO2A</value>
       <value compset="_BGC%BPRP">CO2C</value>
       <value compset="_BGC%BDRD">CO2C</value>
+      <value compset="20TR_DATM%IAF.*_BLOM%ECO">CO2A</value>
+      <value compset="20TR_DATM%JRA.*_BLOM%ECO">CO2A</value>
     </values>
     <group>run_coupling</group>
     <file>env_run.xml</file>
@@ -232,6 +235,11 @@
       <!-- =================================================== -->
       <!-- TODO: why is this here? -->
       <value compset="_DLND.*_CISM\d">1</value>
+      <!-- =================================================== -->
+      <!-- N compsets -->
+      <!-- =================================================== -->
+      <value compset="_DATM.*_BLOM">24</value>
+      <value compset="_BLOM" grid="oi%tnx0.25v">48</value>
     </values>
     <group>run_coupling</group>
     <file>env_run.xml</file>

cime_config/namelist_definition_drv.xml

@@ -2371,6 +2371,7 @@
     </desc>
     <values>
       <value COMP_OCN="pop">4</value>
+      <value COMP_OCN="blom">4</value>
       <value>0</value>
     </values>
   </entry>
@@ -3899,7 +3900,7 @@
     </values>
   </entry>
 
-  <entry id="wavice_coupling">
+  <entry id="wav_coupling_to_cice">
     <type>logical</type>
     <category>expdef</category>
     <group>ALLCOMP_attributes</group>
@@ -3908,6 +3909,8 @@
     </desc>
     <values>
       <value>.false.</value>
+      <!-- The following is not set as a default for now -->
+      <!-- <value wav_coupling_to_cice='on'>.true.</value>    -->
     </values>
   </entry>
 

mediator/esmFldsExchange_cesm_mod.F90

@@ -96,16 +96,16 @@ subroutine esmFldsExchange_cesm(gcomp, phase, rc)
     type(InternalState) :: is_local
     integer             :: n, ns
     character(len=CL)   :: cvalue
-    logical             :: wavice_coupling
+    logical             :: wav_coupling_to_cice
     logical             :: ocn2glc_coupling
     character(len=*) , parameter   :: subname=' (esmFldsExchange_cesm) '
     !--------------------------------------
 
     rc = ESMF_SUCCESS
 
-    call NUOPC_CompAttributeGet(gcomp, name='wavice_coupling', value=cvalue, rc=rc)
+    call NUOPC_CompAttributeGet(gcomp, name='wav_coupling_to_cice', value=cvalue, rc=rc)
     if (ChkErr(rc,__LINE__,u_FILE_u)) return
-    read(cvalue,*) wavice_coupling
+    read(cvalue,*) wav_coupling_to_cice
 
     call NUOPC_CompAttributeGet(gcomp, name='ocn2glc_coupling', value=cvalue, rc=rc)
     if (ChkErr(rc,__LINE__,u_FILE_u)) return
@@ -2831,7 +2831,7 @@ subroutine esmFldsExchange_cesm(gcomp, phase, rc)
     ! ---------------------------------------------------------------------
     ! to ice: wave elevation spectrum (field with ungridded dimensions)
     ! ---------------------------------------------------------------------
-    if (wavice_coupling) then
+    if (wav_coupling_to_cice) then
        if (phase == 'advertise') then
           call addfld_from(compwav, 'Sw_elevation_spectrum')
           call addfld_to(compice, 'Sw_elevation_spectrum')
@@ -2866,7 +2866,7 @@ subroutine esmFldsExchange_cesm(gcomp, phase, rc)
     !----------------------------------------------------------
     ! to wav: ice thickness from ice
     !----------------------------------------------------------
-    if (wavice_coupling) then
+    if (wav_coupling_to_cice) then
        if (phase == 'advertise') then
           call addfld_from(compice, 'Si_thick')
           call addfld_to(compwav, 'Si_thick')
@@ -2881,7 +2881,7 @@ subroutine esmFldsExchange_cesm(gcomp, phase, rc)
     !----------------------------------------------------------
     ! to wav: ice floe diameter from ice
     !----------------------------------------------------------
-    if (wavice_coupling) then
+    if (wav_coupling_to_cice) then
        if (phase == 'advertise') then
           call addfld_from(compice, 'Si_floediam')
           call addfld_to(compwav, 'Si_floediam')