Log much more information about FiPy environment #990
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Remove obsolete vitals module (svn, really???)
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Based on discussion with @wd15 last night, I realized I hadn't made clear the point of this PR. When DEBUG logging is on, this PR results in output like (although not formatted for readability) 2024-01-10 08:36:09,640 - DEBUG - fipy - <module> - {
'argv': ['-m'],
'platform': {
'architecture': ['64bit', ''],
'machine': 'arm64',
'node': 'DEADBEEF',
'platform': 'macOS-13.6.2-arm64-arm-64bit',
'processor': 'arm',
'release': '22.6.0',
'system': 'Darwin',
'version': 'Darwin Kernel Version 22.6.0: Thu Nov 2 07:43:57 PDT 2023; root:xnu-8796.141.3.701.17~6/RELEASE_ARM64_T6000'
},
'package': {
'python': '3.11.4 | packaged by conda-forge | (main, Jun 10 2023, 18:08:41) [Clang 15.0.7 ]',
'fipy': '3.4.4+294.gdf9e2f4d7',
'numpy': '1.24.3',
'pysparse': 'not installed',
'scipy': '1.10.1',
'matplotlib': '3.7.1',
'mpi4py': '3.1.4',
'petsc4py': '3.18.4',
'pyamgx': 'not installed',
'PyTrilinos': 'not installed',
'mayavi': '4.8.1',
'gmsh': '4.11.1',
'solver': 'petsc'
},
'conda': {
'conda_info': {
'GID': 36677,
'UID': 17723,
'active_prefix': '/Users/guyer/mambaforge-arm/envs/fipy311',
'active_prefix_name': 'fipy311',
'av_data_dir': '/Users/guyer/mambaforge-arm/etc/conda',
'av_metadata_url_base': None,
'channels': ['https://conda.anaconda.org/conda-forge/osx-arm64',
'https://conda.anaconda.org/conda-forge/noarch',
'https://repo.anaconda.com/pkgs/main/osx-arm64',
'https://repo.anaconda.com/pkgs/main/noarch',
'https://repo.anaconda.com/pkgs/r/osx-arm64',
'https://repo.anaconda.com/pkgs/r/noarch'
],
'conda_build_version': 'not installed',
'conda_env_version': '23.7.4',
'conda_location': '/Users/guyer/mambaforge-arm/lib/python3.10/site-packages/conda',
'conda_prefix': '/Users/guyer/mambaforge-arm',
'conda_shlvl': 2,
'conda_version': '23.7.4',
'config_files': ['/Users/guyer/mambaforge-arm/.condarc',
'/Users/guyer/.condarc'
],
'default_prefix': '/Users/guyer/mambaforge-arm/envs/fipy311',
'env_vars': {
'CIO_TEST': '<not set>',
'CONDA_DEFAULT_ENV': 'fipy311',
'CONDA_EXE': '/Users/guyer/mambaforge-arm/bin/conda',
'CONDA_PREFIX': '/Users/guyer/mambaforge-arm/envs/fipy311',
'CONDA_PREFIX_1': '/Users/guyer/mambaforge-arm',
'CONDA_PROMPT_MODIFIER': '(fipy311) ',
'CONDA_PYTHONBREAKPOINT': '',
'CONDA_PYTHON_EXE': '/Users/guyer/mambaforge-arm/bin/python',
'CONDA_ROOT': '/Users/guyer/mambaforge-arm',
'CONDA_SHLVL': '2',
'CURL_CA_BUNDLE': '<not set>',
'DYLD_LIBRARY_PATH': '/Users/guyer/anaconda/envs/fipy_petsc/lib/python2.7/site-packages/petsc/lib:/usr/local/lib/SMESH-5.1.2.2:/usr/local/lib/GEOM-5.1.2.7:/Library/OpenCASCADE/6.3.0/lib:',
'LD_LIBRARY_PATH': '/Users/guyer/anaconda/envs/fipy_petsc/lib:',
'LD_PRELOAD': '<not set>',
'MANPATH': ':/usr/local/man',
'PATH': '/Users/guyer/mambaforge-arm/envs/fipy311/bin:/Users/guyer/mambaforge-arm/condabin:/Users/guyer/anaconda/bin:/Applications/Postgres.app/Contents/Versions/9.3/bin:/Users/guyer/bin:/usr/local/share/python:/usr/local/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Users/guyer/.local/bin',
'PYTHONBREAKPOINT': 'ipdb.set_trace',
'REQUESTS_CA_BUNDLE': '<not set>',
'SSL_CERT_FILE': '<not set>'
},
'envs': ['/Users/guyer/.condax/conda-lock',
'/Users/guyer/conda-smithy-sucks/envs/gmsh',
'/Users/guyer/mambaforge',
'/Users/guyer/mambaforge-arm',
'/Users/guyer/mambaforge-arm/envs/caleb',
'/Users/guyer/mambaforge-arm/envs/cantera',
'/Users/guyer/mambaforge-arm/envs/cantera-trilinos',
'/Users/guyer/mambaforge-arm/envs/finances',
'/Users/guyer/mambaforge-arm/envs/fipy27',
'/Users/guyer/mambaforge-arm/envs/fipy311',
'/Users/guyer/mambaforge-arm/envs/fipy3116',
'/Users/guyer/mambaforge-arm/envs/fipy_numpy_125',
'/Users/guyer/mambaforge-arm/envs/fipy_solver_benchmarking_310',
'/Users/guyer/mambaforge-arm/envs/fipy_solver_benchmarking_311',
'/Users/guyer/mambaforge-arm/envs/icmed',
'/Users/guyer/mambaforge-arm/envs/ntd2d',
'/Users/guyer/mambaforge-arm/envs/petsc-osx-64',
'/Users/guyer/mambaforge-arm/envs/petsc27',
'/Users/guyer/mambaforge-arm/envs/radhe',
'/Users/guyer/mambaforge-arm/envs/sphinx',
'/Users/guyer/mambaforge-arm/envs/sphinx53',
'/Users/guyer/mambaforge-arm/envs/sphinx712',
'/Users/guyer/mambaforge-arm/envs/teqpdocs',
'/Users/guyer/mambaforge/envs/binky',
'/Users/guyer/mambaforge/envs/finances',
'/Users/guyer/mambaforge/envs/fipy27',
'/Users/guyer/mambaforge/envs/fipy37',
'/Users/guyer/mambaforge/envs/fipy38',
'/Users/guyer/mambaforge/envs/fipy38b',
'/Users/guyer/mambaforge/envs/fipy3k',
'/Users/guyer/mambaforge/envs/fipy3k_again',
'/Users/guyer/mambaforge/envs/fipy3k_mayavi',
'/Users/guyer/mambaforge/envs/linting',
'/Users/guyer/mambaforge/envs/linting27',
'/Users/guyer/mambaforge/envs/pipfipy',
'/Users/guyer/mambaforge/envs/swc'
],
'envs_dirs': ['/Users/guyer/mambaforge-arm/envs',
'/Users/guyer/.conda/envs'
],
'netrc_file': None,
'offline': False,
'pkgs_dirs': ['/Users/guyer/mambaforge-arm/pkgs',
'/Users/guyer/.conda/pkgs'
],
'platform': 'osx-arm64',
'python_version': '3.10.10.final.0',
'rc_path': '/Users/guyer/.condarc',
'requests_version': '2.31.0',
'root_prefix': '/Users/guyer/mambaforge-arm',
'root_writable': True,
'site_dirs': [],
'sys.executable': '/Users/guyer/mambaforge-arm/bin/python',
'sys.prefix': '/Users/guyer/mambaforge-arm',
'sys.version': '3.10.10 | packaged by conda-forge | (main, Mar 24 2023, 20:12:31) [Clang 14.0.6 ]',
'sys_rc_path': '/Users/guyer/mambaforge-arm/.condarc',
'user_agent': 'conda/23.7.4 requests/2.31.0 CPython/3.10.10 Darwin/22.6.0 OSX/13.6.2 solver/libmamba conda-libmamba-solver/23.3.0 libmambapy/1.5.1',
'user_rc_path': '/Users/guyer/.condarc',
'virtual_pkgs': [
['__archspec', '1', 'arm64'],
['__osx', '13.6.2', '0'],
['__unix', '0', '0']
]
},
'conda_env': {
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'dataclasses=0.8=pyhc8e2a94_3',
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'double-conversion=3.2.0=hb7217d7_1',
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'glib=2.76.3=ha614eb4_0',
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'jaraco.classes=3.2.3=pyhd8ed1ab_0',
'jbig=2.1=h3422bc3_2003',
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'jpeg=9e=h1a8c8d9_3',
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'jsonschema=4.17.3=pyhd8ed1ab_0',
'jupyter=1.0.0=py311h267d04e_8',
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'libbrotlienc=1.0.9=h1a8c8d9_8',
'libcblas=3.9.0=17_osxarm64_openblas',
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'mpi=1.0=mpich',
'mpi4py=3.1.4=py311hc051084_0',
'mpich=4.0.3=hd4b5bf3_100',
'multidict=6.0.4=py311he2be06e_0',
'mumps-include=5.2.1=hce30654_11',
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'mysql-common=8.0.32=h7b5afe1_2',
'mysql-libs=8.0.32=hb292caa_2',
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'openjpeg=2.5.0=hbc2ba62_2',
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'pcre2=10.40=hb34f9b4_0',
'perl=5.32.1=2_h9b22ae9_perl5',
'petsc=3.18.4=real_hce0f69b_100',
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'pexpect=4.8.0=pyh1a96a4e_2',
'pickleshare=0.7.5=py_1003',
'pillow=9.4.0=py311h627eb56_1',
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{
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'typer==0.9.0',
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]
}
],
'name': 'fipy311',
'prefix': '/Users/guyer/mambaforge-arm/envs/fipy311'
}
}
} |
|
The same mechanism is then leveraged to generate the simple table output by the tests, using the |
|
Should log environment variables |
|
How do I switch on the logging? For example if I run |
|
I tried this at the beginning of the example, but nothing happened. |
The problem is that
|
note: that will only dump debug info into a file called --- a/fipy/tools/logging/serial_config.json
+++ b/fipy/tools/logging/serial_config.json
@@ -8,7 +8,8 @@
"handlers": {
"console": {
"class": "logging.StreamHandler",
- "level": "INFO"
+ "formatter": "default",
+ "level": "DEBUG"
},
"serialfile": {
"class": "logging.FileHandler", |
|
I ran examples.phase.simple with
|
|
With |
Definitely needs a |
Ok, I can help with that. Once you've implemented I'll test and add Nix or whatever else there is. Would all the conda variants be covered by just conda? |
They should be. I'm pretty sure there's always a 'conda' command even if you started with 'mamba', and the subprocess should be launched within the environment you're running in, regardless of how many different conda/mamba/micromamba/miniconda environments you have installed (cough cough don't look at my hard drive!). |
|
OK, I've @wd15, please add a clause for nix |
wd15
approved these changes
Jan 22, 2024
|
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Remove obsolete vitals module (svn, really???)