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Web page links seem to be broken #333

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wd15 opened this issue Sep 19, 2014 · 11 comments
Closed

Web page links seem to be broken #333

wd15 opened this issue Sep 19, 2014 · 11 comments
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bug documentation

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@wd15
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wd15 commented Sep 19, 2014

From

http://www.ctcms.nist.gov/fipy/documentation/numerical/index.html

The [Patankar] line doesn't seem to go to the correct place. Same for lots of the other citation links. Also [BoettingerReview:2002] on the front page goes nowhere.

When I build the documentation on my own, the [Patankar] linkswork, but the [BoettingerReview:2002] link is broken.

Imported from trac ticket #456, created by wd15 on 08-16-2012 at 16:06, last modified: 09-11-2013 at 16:00
@fipymigrate
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In b7a9e1f:

#CommitTicketReference repository="fipy" revision="b7a9e1fd267d6c376523df346fa6fdfb8435f889"
Move bibliographic citations to dedicated file

Dedicated bibliography, scanned last by Sphinx, hopefully gets all
citations listed properly.

Addresses issue #333

Trac comment by Jonathan Guyer guyer@nist.gov on 09-09-2013 at 10:51

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In 7372005:

#CommitTicketReference repository="fipy" revision="73720056bee60c375c4aa432be2beb9e4b605c9e"
Fix citation links

Addresses issue #333

Trac comment by Jonathan Guyer guyer@nist.gov on 09-09-2013 at 10:51

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In 832462b:

#CommitTicketReference repository="fipy" revision="832462b05ad3f2c6778b3f81d8f2e3cf105f9ef7"
Clean up citations

Addresses issue #333

Trac comment by Jonathan Guyer guyer@nist.gov on 09-09-2013 at 10:51

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In befb385:

#CommitTicketReference repository="fipy" revision="befb3852a256a9b06ad0b6e1368578b557d50d94"
Switch to sphinxcontrib-bibtex

Change citation syntax to that in
https://github.com/mcmtroffaes/sphinxcontrib-bibtex

Ironically, this has terrible support for LaTeX output
https://github.com/mcmtroffaes/sphinxcontrib-bibtex/issues/10

Addresses issue #333

Trac comment by Jonathan Guyer guyer@nist.gov on 09-09-2013 at 10:51

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In 3c1fc19:

#CommitTicketReference repository="fipy" revision="3c1fc1941ec37b3a8a215dd5803b0c54746524df"
Put references in PDF document

Addresses issue #333

Trac comment by Jonathan Guyer guyer@nist.gov on 09-09-2013 at 10:51

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guyer commented Sep 19, 2014

This ticket incorporates issue #397 which switches to [https://github.com/mcmtroffaes/sphinxcontrib-bibtex sphinxcontrib-bibtex]

Trac comment by guyer on 09-09-2013 at 11:02

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guyer commented Sep 19, 2014

Pull request:


The following changes since commit 44bc4c5eee559d10c0811536ebd8a3c23f72364b:

  Merge branch 'develop' into ticket460-import-fipy-without-solvers-rebase (2013-09-05 16:35:41 -0400)

are available in the git repository at:


  ssh://git@code.matforge.org/nist/fipy.git ticket456-Web_page_links_seem_to_be_broken

for you to fetch changes up to a1e9b1e148f1a4190b042789fffbdab75adeb772:

  Document additional Sphinx package (2013-09-09 10:44:31 -0400)

----------------------------------------------------------------
Jonathan Guyer (8):
Move bibliographic citations to dedicated file
Fix citation links
Clean up citations
Switch to sphinxcontrib-bibtex
Differentiate between html and latex references
Put references in PDF document
Merge branch 'ticket654-Switch_to_sphinxcontrib-bibtex' into ticket456-Web_page_links_seem_to_be_broken
Document additional Sphinx package

 INSTALLATION.txt                                                    |    2 +-
 README.txt                                                          |   13 +-
 documentation/EFFICIENCY.txt                                        |    2 +-
 documentation/GIT.txt                                               |    2 +-
 documentation/USAGE.txt                                             |    6 +-
 documentation/_templates/index.html                                 |   10 +-
 documentation/conf.py                                               |    4 +-
 documentation/contents.txt                                          |    1 +
 documentation/manual.txt                                            |    2 +-
 documentation/numerical/discret.txt                                 |    2 +-
 documentation/numerical/equation.txt                                |    4 +-
 documentation/numerical/index.txt                                   |    6 +-
 documentation/references-latex.txt                                  |    3 +
 documentation/references.txt                                        |    7 +
 documentation/refs.bib                                              |   35 +-
 documentation/sphinxext/bibstuff/.gitignore                         |    2 -
 documentation/sphinxext/bibstuff/README.txt                         |  107 --
 documentation/sphinxext/bibstuff/__init__.py                        |   27 -
 documentation/sphinxext/bibstuff/add2bib.py                         |  607 ---------
 documentation/sphinxext/bibstuff/bib4txt.py                         |  251 ----
 documentation/sphinxext/bibstuff/bibfile.py                         |  437 -------
 documentation/sphinxext/bibstuff/bibgrammar.py                      |  106 --
 documentation/sphinxext/bibstuff/biblabel.py                        |  122 --
 documentation/sphinxext/bibstuff/bibname.py                         |  279 -----
 documentation/sphinxext/bibstuff/bibsearch.py                       |  139 --
 documentation/sphinxext/bibstuff/bibstyles/__init__.py              |   17 -
 documentation/sphinxext/bibstuff/bibstyles/default.py               |  133 --
 documentation/sphinxext/bibstuff/bibstyles/default_templates.py     |   96 --
 documentation/sphinxext/bibstuff/bibstyles/example_numbered.py      |   80 --
 documentation/sphinxext/bibstuff/bibstyles/jasss_style.py           |   82 --
 documentation/sphinxext/bibstuff/bibstyles/shared.py                |  654 ----------
 documentation/sphinxext/bibstuff/data/latex_codec.py                |  594 ---------
 documentation/sphinxext/bibstuff/data/publisher_addresses.txt       |  332 -----
 documentation/sphinxext/bibstuff/doc/license.txt                    |   22 -
 documentation/sphinxext/bibstuff/ebnf_sp.py                         |   63 -
 documentation/sphinxext/bibstuff/examples/example.bib               |   88 --
 documentation/sphinxext/bibstuff/examples/examples-README.txt       |   35 -
 documentation/sphinxext/bibstuff/examples/jmaker.py                 |   20 -
 documentation/sphinxext/bibstuff/examples/journal_abbreviations.txt | 5928 --------------------------------------------------------------------------------------
 documentation/sphinxext/bibstuff/examples/journals_from_csa.txt     | 5928 --------------------------------------------------------------------------------------
 documentation/sphinxext/bibstuff/examples/rst_input.txt             |   65 -
 documentation/sphinxext/bibstuff/examples/testout.txt               |   19 -
 documentation/sphinxext/bibstuff/isbn2bib.py                        |  204 ---
 documentation/sphinxext/bibstuff/jabbrev.py                         |   89 --
 documentation/sphinxext/bibstuff/license.txt                        |   22 -
 documentation/sphinxext/bibstuff/reflist.py                         |   78 --
 documentation/sphinxext/bibstuff/setup.py                           |   16 -
 documentation/sphinxext/bibstuff/sphinxext/README.txt               |   19 -
 documentation/sphinxext/bibstuff/sphinxext/__init__.py              |    1 -
 documentation/sphinxext/bibstuff/sphinxext/bibref.py                |  488 -------
 documentation/sphinxext/bibstuff/sphinxext/tests/__init__.py        |    1 -
 documentation/sphinxext/bibstuff/sphinxext/tests/doc/Makefile       |  130 --
 documentation/sphinxext/bibstuff/sphinxext/tests/doc/conf.py        |  227 ----
 documentation/sphinxext/bibstuff/sphinxext/tests/doc/index.rst      |    8 -
 documentation/sphinxext/bibstuff/sphinxext/tests/doc/make.bat       |  155 ---
 documentation/sphinxext/bibstuff/sphinxext/tests/doc/other.bib      |    0
 documentation/sphinxext/bibstuff/sphinxext/tests/doc/some.bib       |  145 ---
 documentation/sphinxext/bibstuff/sphinxext/tests/doc/test.rst       |   58 -
 documentation/sphinxext/bibstuff/sphinxext/tests/doc/test2.rst      |   10 -
 documentation/sphinxext/bibstuff/sphinxext/tests/style1.py          |   41 -
 documentation/sphinxext/bibstuff/sphinxext/tests/test_bibref.py     |   44 -
 examples/diffusion/mesh1D.py                                        |    2 +-
 examples/flow/stokesCavity.py                                       |    2 +-
 examples/levelSet/electroChem/README.txt                            |    4 +-
 examples/levelSet/electroChem/gold.py                               |    2 +-
 examples/levelSet/electroChem/leveler.py                            |    2 +-
 examples/levelSet/electroChem/simpleTrenchSystem.py                 |    2 +-
 examples/phase/anisotropy.py                                        |    4 +-
 examples/phase/anisotropyOLD.py                                     |    2 +-
 examples/phase/binary.py                                            |    2 +-
 examples/phase/binaryCoupled.py                                     |    2 +-
 examples/phase/impingement/mesh40x1.py                              |    2 +-
 examples/phase/polyxtal.py                                          |    2 +-
 examples/phase/polyxtalCoupled.py                                   |    2 +-
 examples/phase/quaternary.py                                        |    2 +-
 examples/phase/simple.py                                            |    2 +-
 examples/reactiveWetting/liquidVapor1D.py                           |    2 +-
 77 files changed, 70 insertions(+), 18034 deletions(-)
 create mode 100644 documentation/references-latex.txt
 create mode 100644 documentation/references.txt
 delete mode 100644 documentation/sphinxext/bibstuff/.gitignore
 delete mode 100644 documentation/sphinxext/bibstuff/README.txt
 delete mode 100644 documentation/sphinxext/bibstuff/__init__.py
 delete mode 100755 documentation/sphinxext/bibstuff/add2bib.py
 delete mode 100755 documentation/sphinxext/bibstuff/bib4txt.py
 delete mode 100644 documentation/sphinxext/bibstuff/bibfile.py
 delete mode 100644 documentation/sphinxext/bibstuff/bibgrammar.py
 delete mode 100644 documentation/sphinxext/bibstuff/biblabel.py
 delete mode 100755 documentation/sphinxext/bibstuff/bibname.py
 delete mode 100755 documentation/sphinxext/bibstuff/bibsearch.py
 delete mode 100644 documentation/sphinxext/bibstuff/bibstyles/__init__.py
 delete mode 100644 documentation/sphinxext/bibstuff/bibstyles/default.py
 delete mode 100644 documentation/sphinxext/bibstuff/bibstyles/default_templates.py
 delete mode 100644 documentation/sphinxext/bibstuff/bibstyles/example_numbered.py
 delete mode 100644 documentation/sphinxext/bibstuff/bibstyles/jasss_style.py
 delete mode 100644 documentation/sphinxext/bibstuff/bibstyles/shared.py
 delete mode 100644 documentation/sphinxext/bibstuff/data/latex_codec.py
 delete mode 100644 documentation/sphinxext/bibstuff/data/publisher_addresses.txt
 delete mode 100644 documentation/sphinxext/bibstuff/doc/license.txt
 delete mode 100644 documentation/sphinxext/bibstuff/ebnf_sp.py
 delete mode 100755 documentation/sphinxext/bibstuff/examples/example.bib
 delete mode 100644 documentation/sphinxext/bibstuff/examples/examples-README.txt
 delete mode 100644 documentation/sphinxext/bibstuff/examples/jmaker.py
 delete mode 100644 documentation/sphinxext/bibstuff/examples/journal_abbreviations.txt
 delete mode 100644 documentation/sphinxext/bibstuff/examples/journals_from_csa.txt
 delete mode 100644 documentation/sphinxext/bibstuff/examples/rst_input.txt
 delete mode 100644 documentation/sphinxext/bibstuff/examples/testout.txt
 delete mode 100644 documentation/sphinxext/bibstuff/isbn2bib.py
 delete mode 100644 documentation/sphinxext/bibstuff/jabbrev.py
 delete mode 100644 documentation/sphinxext/bibstuff/license.txt
 delete mode 100644 documentation/sphinxext/bibstuff/reflist.py
 delete mode 100644 documentation/sphinxext/bibstuff/setup.py
 delete mode 100644 documentation/sphinxext/bibstuff/sphinxext/README.txt
 delete mode 100644 documentation/sphinxext/bibstuff/sphinxext/__init__.py
 delete mode 100644 documentation/sphinxext/bibstuff/sphinxext/bibref.py
 delete mode 100644 documentation/sphinxext/bibstuff/sphinxext/tests/__init__.py
 delete mode 100644 documentation/sphinxext/bibstuff/sphinxext/tests/doc/Makefile
 delete mode 100644 documentation/sphinxext/bibstuff/sphinxext/tests/doc/conf.py
 delete mode 100644 documentation/sphinxext/bibstuff/sphinxext/tests/doc/index.rst
 delete mode 100644 documentation/sphinxext/bibstuff/sphinxext/tests/doc/make.bat
 delete mode 100644 documentation/sphinxext/bibstuff/sphinxext/tests/doc/other.bib
 delete mode 100644 documentation/sphinxext/bibstuff/sphinxext/tests/doc/some.bib
 delete mode 100644 documentation/sphinxext/bibstuff/sphinxext/tests/doc/test.rst
 delete mode 100644 documentation/sphinxext/bibstuff/sphinxext/tests/doc/test2.rst
 delete mode 100644 documentation/sphinxext/bibstuff/sphinxext/tests/style1.py
 delete mode 100644 documentation/sphinxext/bibstuff/sphinxext/tests/test_bibref.py

Trac comment by guyer on 09-09-2013 at 11:06

@wd15
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wd15 commented Sep 19, 2014

The Following link seems to be broken:

Trac comment by wd15 on 09-11-2013 at 14:11

@wd15
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wd15 commented Sep 19, 2014

All the other links worked...I tested a lot of them.

Trac comment by wd15 on 09-11-2013 at 14:12

@guyer
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guyer commented Sep 19, 2014

Replying to wd15:

this might be because this may be the future mailing list link (after this ticket is closed)

Yes. This branch is from a commit earlier than the mailing list fix. Should be OK once merged.

Trac comment by guyer on 09-11-2013 at 14:43

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In 7144a9b:

#CommitTicketReference repository="fipy" revision="7144a9b7b088d8f5914c21efb7000b9c14aee49d"
Merge branch 'ticket456-Web_page_links_seem_to_be_broken' into develop

Fixes issue #333

Trac comment by Daniel Wheeler daniel.wheeler2@gmail.com on 09-11-2013 at 16:00

@wd15 wd15 closed this as completed Sep 19, 2014
@guyer guyer mentioned this issue Sep 19, 2014
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