diff --git a/compsets/all.input b/compsets/all.input index 40c2d261..cb890df8 100644 --- a/compsets/all.input +++ b/compsets/all.input @@ -14,7 +14,9 @@ run cpld_fv3_384_mom6_cice_2d_atm_flux @ fv3, coupledapp, warm384 #These can be run separately from the baseline test cases #above by commenting those 4 tests out. The user must then #first run the benchmark cold start alone. The location of -#cold start mediator files is then used to run the warm start +#cold start mediator files is then used to run the warm start. +#The full path to the cold start mediator files is specified as +#MED_restart_data in benchmark_warm.input. #load 'benchmark_cold.input' #load 'benchmark_warm.input' @@ -27,7 +29,9 @@ run cpld_fv3_384_mom6_cice_2d_atm_flux @ fv3, coupledapp, warm384 #These can be run separately from the baseline test cases #above by commenting those 4 tests out. The user must then #first run the 4 cold starts alone. The location of -#cold start mediator files are then used to run the warm starts +#cold start mediator files is then used to run the warm starts. The +#full path to the cold start mediator files is specified as ROOTDIR +#in the datesuite_warm.input. #load 'datesuite_cold.input' #run cpld_fv3_384_mom6_cice_cold_2012010100 @ benchmark, coldBM2 diff --git a/compsets/benchmark_cold.input b/compsets/benchmark_cold.input index 817ea43a..a1d016aa 100644 --- a/compsets/benchmark_cold.input +++ b/compsets/benchmark_cold.input @@ -14,7 +14,7 @@ test cpld_fv3_384_mom6_cice_cold_bmark: fv3_mom6_cice.exe { FNALBC="'global_snowfree_albedo.bosu.t766.1536.768.rg.grb'," FNVETC="'global_vegtype.igbp.t766.1536.768.rg.grb'," FNSOTC="'global_soiltype.statsgo.t766.1536.768.rg.grb'," - FNSMCC="'global_soilmgldas.t766.1536.768.grb'," + FNSMCC="'global_soilmgldas.statsgo.t766.1536.768.grb'," FNABSC="'global_mxsnoalb.uariz.t766.1536.768.rg.grb'," FV3_mosaic="C@[ATMRES]" diff --git a/compsets/benchmark_warm.input b/compsets/benchmark_warm.input index dfcb9a41..bc7b4321 100644 --- a/compsets/benchmark_warm.input +++ b/compsets/benchmark_warm.input @@ -20,7 +20,7 @@ test cpld_fv3_384_mom6_cice_2d_bmark: fv3_mom6_cice.exe { FNALBC="'global_snowfree_albedo.bosu.t766.1536.768.rg.grb'," FNVETC="'global_vegtype.igbp.t766.1536.768.rg.grb'," FNSOTC="'global_soiltype.statsgo.t766.1536.768.rg.grb'," - FNSMCC="'global_soilmgldas.t766.1536.768.grb'," + FNSMCC="'global_soilmgldas.statsgo.t766.1536.768.grb'," FNABSC="'global_mxsnoalb.uariz.t766.1536.768.rg.grb'," FV3_mosaic="C@[ATMRES]" @@ -69,8 +69,9 @@ test cpld_fv3_384_mom6_cice_2d_bmark: fv3_mom6_cice.exe { CICE5_IC="@[BM_IC]/cpc" # set location of cold start for mediator restarts - # THIS IS A USER's OWN RUN - MED_restart_data="/scratch2/NCEPDEV/stmp1/Denise.Worthen/BM_Test/@[CDATE]_cold/tmp/cpld_fv3_384_mom6_cice_cold_bmark" + # THIS IS A USER's OWN RUN and should reflect the full path to the location of the cold start + # eg: "/scratch2/NCEPDEV/stmp1/First.LastName/rtgen.NUMBER/tmp/cpld_fv3_384_mom6_cice_cold_bmark" + MED_restart_data="full-path-to-user-coldstart" RESTART_MED="mediator_*" # - nems.configure --- diff --git a/compsets/cpld_fv3_mom6_cice_2d_atm_flux.input b/compsets/cpld_fv3_mom6_cice_2d_atm_flux.input index 1eaf91bd..0c3eb5c5 100644 --- a/compsets/cpld_fv3_mom6_cice_2d_atm_flux.input +++ b/compsets/cpld_fv3_mom6_cice_2d_atm_flux.input @@ -73,12 +73,6 @@ test cpld_fv3_mom6_cice_2d_atm_flux: fv3_mom6_cice.exe { # Specify input files. filters input { # WORK FILE <=filter= SOURCE FILE - 'input.nml' <=atparse= "@[PARMnems]/@[INPUT_NML]" - 'model_configure' <=atparse= "@[PARMnems]/model_configure.IN" - 'ice_in_template' <=copy= "@[PARMnems]/ice_in_template" - 'INPUT/MOM_input_template' <=copy= "@[PARMnems]/MOM_input_template" - 'diag_table_template' <=copy= "@[PARMnems]/diag_table_template" - "nems.configure" <=atparse= "@[PARMnems]/nems.configure.@[nems_configure].IN" #FV3 fixed input 'aerosol.dat' <=copyfrom= "@[FV3_input_data]/INPUT" 'co2historicaldata_201*.txt' <=copyfrom= "@[CO2_data]" @@ -105,6 +99,13 @@ test cpld_fv3_mom6_cice_2d_atm_flux: fv3_mom6_cice.exe { 'INPUT/MOM*.nc' <=copyfrom= "@[MOM6_IC]" 'cice5_model.res.nc' <=copy= "@[CICE5_IC]/cice5_model_0.25.res_@[CDATE].nc" "@[RESTART_MED]" <=copyfrom= "@[MED_restart_data]" +# namelists,templates and configurations + 'input.nml' <=atparse= "@[PARMnems]/@[INPUT_NML]" + 'model_configure' <=atparse= "@[PARMnems]/model_configure.IN" + 'ice_in_template' <=copy= "@[PARMnems]/ice_in_template" + 'INPUT/MOM_input_template' <=copy= "@[PARMnems]/MOM_input_template" + 'diag_table_template' <=copy= "@[PARMnems]/diag_table_template" + "nems.configure" <=atparse= "@[PARMnems]/nems.configure.@[nems_configure].IN" } # Edit the templates for the compset parameters diff --git a/compsets/cpld_fv3_mom6_cice_cold_atm_flux.input b/compsets/cpld_fv3_mom6_cice_cold_atm_flux.input index ddb15a6d..9833a2ac 100644 --- a/compsets/cpld_fv3_mom6_cice_cold_atm_flux.input +++ b/compsets/cpld_fv3_mom6_cice_cold_atm_flux.input @@ -71,12 +71,6 @@ test cpld_fv3_mom6_cice_cold_atm_flux: fv3_mom6_cice.exe { # Specify input files. filters input { # WORK FILE <=filter= SOURCE FILE - 'input.nml' <=atparse= "@[PARMnems]/@[INPUT_NML]" - 'model_configure' <=atparse= "@[PARMnems]/model_configure.IN" - 'ice_in_template' <=copy= "@[PARMnems]/ice_in_template" - 'INPUT/MOM_input_template' <=copy= "@[PARMnems]/MOM_input_template" - 'diag_table_template' <=copy= "@[PARMnems]/diag_table_template" - "nems.configure" <=atparse= "@[PARMnems]/nems.configure.@[nems_configure].IN" #FV3 fixed input 'aerosol.dat' <=copyfrom= "@[FV3_input_data]/INPUT" 'co2historicaldata_201*.txt' <=copyfrom= "@[CO2_data]" @@ -102,6 +96,13 @@ test cpld_fv3_mom6_cice_cold_atm_flux: fv3_mom6_cice.exe { 'INPUT/gfs_data*.nc' <=copyfrom= "@[FV3_IC]" 'INPUT/MOM*.nc' <=copyfrom= "@[MOM6_IC]" 'cice5_model.res.nc' <=copy= "@[CICE5_IC]/cice5_model_0.25.res_@[CDATE].nc" +# namelists,templates and configurations + 'input.nml' <=atparse= "@[PARMnems]/@[INPUT_NML]" + 'model_configure' <=atparse= "@[PARMnems]/model_configure.IN" + 'ice_in_template' <=copy= "@[PARMnems]/ice_in_template" + 'INPUT/MOM_input_template' <=copy= "@[PARMnems]/MOM_input_template" + 'diag_table_template' <=copy= "@[PARMnems]/diag_table_template" + "nems.configure" <=atparse= "@[PARMnems]/nems.configure.@[nems_configure].IN" } # Edit the templates for the compset parameters diff --git a/compsets/datesuite_warm.input b/compsets/datesuite_warm.input index e2cf59e4..1d18901e 100644 --- a/compsets/datesuite_warm.input +++ b/compsets/datesuite_warm.input @@ -2,7 +2,9 @@ load 'benchmark_warm.input' # set this as the location of the 4 cold starts - ROOTDIR = "/scratch2/NCEPDEV/stmp1/Denise.Worthen/coldstarts" + # THIS IS A USERS OWN RUN and should reflect the path to the location of the cold starts + # eg: "/scratch2/NCEPDEV/stmp1/First.LastName/rtgen.NUMBER" + ROOTDIR = "path-to-user-coldstarts" DAYS='5' FHMAX='120' diff --git a/log/report-hera.intel-log/build_fv3_mom6_cice.exe.log b/log/report-hera.intel-log/build_fv3_mom6_cice.exe.log index 15bf5cca..87fd87a8 100644 --- a/log/report-hera.intel-log/build_fv3_mom6_cice.exe.log +++ b/log/report-hera.intel-log/build_fv3_mom6_cice.exe.log @@ -1,21 +1,21 @@ + [[ fv3_mom6_cice.exe == fv3_mom6_cice.exe ]] -+ rm -f /scratch2/NCEPDEV/stmp1/Denise.Worthen/rtgen.86760/exec/fv3_mom6_cice.exe -+ md5sum=/scratch2/NCEPDEV/stmp1/Denise.Worthen/rtgen.86760/exec/fv3_mom6_cice.exe.md5 ++ rm -f /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe ++ md5sum=/scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe.md5 + OPTS=app=coupledFV3_MOM6_CICE -+ mkdir -p /scratch2/NCEPDEV/stmp1/Denise.Worthen/rtgen.86760/exec /scratch2/NCEPDEV/stmp1/Denise.Worthen/rtgen.86760/include -+ rm -f /scratch2/NCEPDEV/stmp1/Denise.Worthen/rtgen.86760/exec/fv3_mom6_cice.exe /scratch2/NCEPDEV/stmp1/Denise.Worthen/rtgen.86760/include/modules_fv3_mom6_cice -+ cd /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster ++ mkdir -p /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/include ++ rm -f /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/include/modules_fv3_mom6_cice ++ cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model + which aprun which: no aprun in (/scratch1/NCEPDEV/nems/emc.nemspara/soft/emc-utils/1.1.0/bin:/apps/hpss:/apps/rocoto/1.3.1/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibutils/bin:/apps/local/bin:/apps/local/sbin:/apps/slurm/default/slurm/tools:/apps/slurm/default/bin:/apps/slurm/default/sbin:/apps/slurm/tools/sbank/bin) + ./NEMS/NEMSAppBuilder norebuild app=coupledFV3_MOM6_CICE ls: cannot access ../conf/component_*.mk: No such file or directory NEMSAppBuilder: make app=coupledFV3_MOM6_CICE build -Convert /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/coupledFV3_MOM6_CICE.appBuilder -...into /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/coupledFV3_MOM6_CICE.appBuilder.mk -Include /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/coupledFV3_MOM6_CICE.appBuilder.mk -echo 'FMS FV3 MOM6 CICE' > "/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf/components.mk" +Convert /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/coupledFV3_MOM6_CICE.appBuilder +...into /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/coupledFV3_MOM6_CICE.appBuilder.mk +Include /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/coupledFV3_MOM6_CICE.appBuilder.mk +echo 'FMS FV3 MOM6 CICE' > "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/components.mk" Adding FV3 makeopts to FMS makeopts -. /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; cd /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/fv3gfs ; \ +. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/fv3gfs ; \ exec make all Currently Loaded Modules: @@ -27,19 +27,19 @@ Currently Loaded Modules: -make[1]: Entering directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/fv3gfs' -mkdir -p "/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL" -mv fms.mk "/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL/." -cp -fp *.a *.mod ../include/*.h "/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL"/. -make[1]: Leaving directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/fv3gfs' -test -d /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL -Compiling into /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/FV3_INSTALL on hera -cp -fp /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf/configure.nems \ - "/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3"/conf/configure.fv3 -cp -fp /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf/modules.nems \ - "/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3"/conf/modules.fv3 -. /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; cd /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3 ; \ - exec make COMP=FV3 COMP_SRCDIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3 COMP_BINDIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/FV3_INSTALL MACHINE_ID=hera FMS_DIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL nemsinstall +make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/fv3gfs' +mkdir -p "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL" +mv fms.mk "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL/." +cp -fp *.a *.mod ../include/*.h "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL"/. +make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/fv3gfs' +test -d /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL +Compiling into /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL on hera +cp -fp /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/configure.nems \ + "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3"/conf/configure.fv3 +cp -fp /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/modules.nems \ + "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3"/conf/modules.fv3 +. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3 ; \ + exec make COMP=FV3 COMP_SRCDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3 COMP_BINDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL MACHINE_ID=hera FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL nemsinstall Currently Loaded Modules: 1) contrib 6) bacio/2.0.3 11) w3nco/2.0.7 16) png/1.2.44 @@ -50,71 +50,71 @@ Currently Loaded Modules: -make[1]: Entering directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3' -make -C cpl FMS_DIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL +make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3' +make -C cpl FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL Build standalone FV3 io ... -make[2]: Entering directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/cpl' +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/cpl' make[2]: Nothing to be done for `all'. -make[2]: Leaving directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/cpl' -make -C gfsphysics FMS_DIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL 32BIT=N # force gfs physics to 64bit +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/cpl' +make -C gfsphysics FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL 32BIT=N # force gfs physics to 64bit Build standalone FV3 gfsphysics ... -make[2]: Entering directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/gfsphysics' +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/gfsphysics' make[2]: Nothing to be done for `all'. -make[2]: Leaving directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/gfsphysics' -make -C ipd FMS_DIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL 32BIT=N # force gfs physics to 64bit +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/gfsphysics' +make -C ipd FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL 32BIT=N # force gfs physics to 64bit Build standalone FV3 gfsphysics ... -make[2]: Entering directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/ipd' +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/ipd' make[2]: Nothing to be done for `all'. -make[2]: Leaving directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/ipd' -make -C io FMS_DIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/ipd' +make -C io FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL Build standalone FV3 io ... $ESMF_INC is [-I/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/mod -I/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/include -I/apps/netcdf/4.6.1/intel/16.1.150/include] -make[2]: Entering directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/io' +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/io' make[2]: Nothing to be done for `all'. -make[2]: Leaving directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/io' -make -C atmos_cubed_sphere FMS_DIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/io' +make -C atmos_cubed_sphere FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL Build standalone FV3 fv3core ... -make[2]: Entering directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/atmos_cubed_sphere' +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/atmos_cubed_sphere' make[2]: Nothing to be done for `all'. -make[2]: Leaving directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/atmos_cubed_sphere' -make -C ../stochastic_physics FMS_DIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL 32BIT=N # force gfs physics to 64bit +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/atmos_cubed_sphere' +make -C ../stochastic_physics FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL 32BIT=N # force gfs physics to 64bit Build standalone FV3 stochastic_physics ... -make[2]: Entering directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/stochastic_physics' +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/stochastic_physics' make[2]: Nothing to be done for `all'. -make[2]: Leaving directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/stochastic_physics' -make libfv3cap.a FMS_DIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL -make[2]: Entering directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3' +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/stochastic_physics' +make libfv3cap.a FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3' make[2]: `libfv3cap.a' is up to date. -make[2]: Leaving directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3' -make esmf_make_fragment FMS_DIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL -make[2]: Entering directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3' +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3' +make esmf_make_fragment FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3' # additional include files needed for PGI -#@echo "ESMF_DEP_INCPATH = /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/nems_dir" >> fv3.mk +#@echo "ESMF_DEP_INCPATH = /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/nems_dir" >> fv3.mk Finished generating ESMF self-describing build dependency makefile fragment: fv3.mk -make[2]: Leaving directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3' -Installation into "/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/FV3_INSTALL" complete! +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3' +Installation into "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL" complete! -make[1]: Leaving directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3' -test -d /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/FV3_INSTALL -rm -fr /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6/exec -. /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; export COMP_SRCDIR="/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6" COMP_BINDIR="/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6_INSTALL" FMS_BINDIR="/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL" MACHINE_ID="hera" ; \ +make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3' +test -d /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL +rm -fr /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6/exec +. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; export COMP_SRCDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6" COMP_BINDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL" FMS_BINDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL" MACHINE_ID="hera" ; \ set -e ; \ -cd /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6 ; \ -./compile.sh --platform hera --fms-dir "/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL" +cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6 ; \ +./compile.sh --platform hera --fms-dir "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL" Currently Loaded Modules: 1) contrib 6) bacio/2.0.3 11) w3nco/2.0.7 16) png/1.2.44 @@ -125,9 +125,9 @@ Currently Loaded Modules: -Will use FMS from: /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL +Will use FMS from: /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL ++ pwd -+ BASEDIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6 ++ BASEDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6 + MACHINE_ID=hera + COMPILE_OPTION=hera-intel.mk + compile_MOM6_LIB=1 @@ -136,7 +136,7 @@ Will use FMS from: /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_ + [[ 1 == 1 ]] + echo 'compile MOM6 library ...' compile MOM6 library ... -+ cd /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6 ++ cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6 + mkdir -p build/intel/MOM6_LIB/repro + cd build/intel/MOM6_LIB/repro + [[ -f path_names ]] @@ -147,32 +147,32 @@ generating file_paths ... A list of the files you checked out is in the file path_names. + echo 'generating makefile ...' generating makefile ... -+ ../../../../src/mkmf/bin/mkmf -t ../../../../src/mkmf/templates/hera-intel.mk -p lib_ocean.a -o -I/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL path_names ++ ../../../../src/mkmf/bin/mkmf -t ../../../../src/mkmf/templates/hera-intel.mk -p lib_ocean.a -o -I/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL path_names ........................................................................................................................................................................................................................................... Makefile is ready. + echo 'compiling MOM6 library...' compiling MOM6 library... + make NETCDF=4 REPRO=1 lib_ocean.a -make[1]: Entering directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6/build/intel/MOM6_LIB/repro' +make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6/build/intel/MOM6_LIB/repro' make[1]: `lib_ocean.a' is up to date. -make[1]: Leaving directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6/build/intel/MOM6_LIB/repro' +make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6/build/intel/MOM6_LIB/repro' + echo 'compiling MOM6 library successful' compiling MOM6 library successful + echo 'compiling MOM6 library done' compiling MOM6 library done -+ cd /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6 ++ cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6 + mkdir -p exec/hera/ -+ ln -s /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6/build/intel/MOM6_LIB/repro exec/hera/lib_ocean ++ ln -s /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6/build/intel/MOM6_LIB/repro exec/hera/lib_ocean + [[ 0 == 1 ]] + echo ================================================== ================================================== + [[ 0 == 1 ]] + echo 'Next recommended step is to rejoice out of happiness from a successful compile.' Next recommended step is to rejoice out of happiness from a successful compile. -. /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; cd /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6 ; \ - exec make -f makefile.nuopc COMP_SRCDIR="/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6" COMP_BINDIR="/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6_INSTALL" FMS_BINDIR="/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL" MACHINE_ID="hera" \ - "FMSDIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL" \ - "NEMSMOMDIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6/exec/hera" \ - "INSTALLDIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6_INSTALL" install +. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6 ; \ + exec make -f makefile.nuopc COMP_SRCDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6" COMP_BINDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL" FMS_BINDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL" MACHINE_ID="hera" \ + "FMSDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL" \ + "NEMSMOMDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6/exec/hera" \ + "INSTALLDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL" install Currently Loaded Modules: 1) contrib 6) bacio/2.0.3 11) w3nco/2.0.7 16) png/1.2.44 @@ -183,19 +183,19 @@ Currently Loaded Modules: -make[1]: Entering directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6' +make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6' rm -f mom6.mk.install -mkdir -p /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6_INSTALL -cp -f /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6/exec/hera/lib_ocean/lib_ocean.a /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6_INSTALL -cp -f libmom.a mom_cap_mod.mod /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6_INSTALL -cp -f mom6.mk.install /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6_INSTALL/mom6.mk -make[1]: Leaving directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6' -test -d "/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6_INSTALL" -test -s "/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6_INSTALL/mom6.mk" -. /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; \ +mkdir -p /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL +cp -f /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6/exec/hera/lib_ocean/lib_ocean.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL +cp -f libmom.a mom_cap_mod.mod /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL +cp -f mom6.mk.install /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/mom6.mk +make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6' +test -d "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL" +test -s "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/mom6.mk" +. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; \ set -eu ; \ -export COMP_SRCDIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE COMP_BINDIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_INSTALL SITE="NEMS.hera" SYSTEM_USERDIR="/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE" SRCDIR="/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE" EXEDIR="/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE" NEMS_GRID="T126_mx5" ; \ -cd /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE ; \ +export COMP_SRCDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE COMP_BINDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL SITE="NEMS.hera" SYSTEM_USERDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE" SRCDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE" EXEDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE" NEMS_GRID="T126_mx5" ; \ +cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE ; \ ./comp_ice.backend Currently Loaded Modules: @@ -210,10 +210,10 @@ Currently Loaded Modules: NEMS_GRID = T126_mx025 tcx comp_ice.backend res grid mx025 1440x1080 ARCH is Linux.NEMS.hera -gmake[1]: Entering directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_SRC/lanl_cice/compile' +gmake[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_SRC/lanl_cice/compile' gmake[1]: Nothing to be done for `all'. -gmake[1]: Leaving directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_SRC/lanl_cice/compile' -/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_SRC/lanl_cice +gmake[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_SRC/lanl_cice/compile' +/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_SRC/lanl_cice NTASK = 48 global N, block_size x 1440, 60 @@ -227,9 +227,9 @@ max_blocks = 1 0 = TRBRI, brine height tracer 7 = NBGCLYR, number of bio grid layers 0 = TRBGCS, number of BGC tracers -. /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; cd /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_CAP ; exec make -f makefile.nuopc \ - COMP_SRCDIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE COMP_BINDIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_INSTALL SITE="NEMS.hera" SYSTEM_USERDIR="/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE" SRCDIR="/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE" EXEDIR="/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE" NEMS_GRID="T126_mx5" \ - "LANLCICEDIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE" "INSTALLDIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_INSTALL" install +. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_CAP ; exec make -f makefile.nuopc \ + COMP_SRCDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE COMP_BINDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL SITE="NEMS.hera" SYSTEM_USERDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE" SRCDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE" EXEDIR="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE" NEMS_GRID="T126_mx5" \ + "LANLCICEDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE" "INSTALLDIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL" install Currently Loaded Modules: 1) contrib 6) bacio/2.0.3 11) w3nco/2.0.7 16) png/1.2.44 @@ -240,30 +240,30 @@ Currently Loaded Modules: -make[1]: Entering directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_SRC/lanl_cice_cap' +make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_SRC/lanl_cice_cap' rm -f cice.mk.install -mkdir -p /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_INSTALL -cp -f /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE/liblanl_cice.a /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_INSTALL -cp -f libcice.a cice_cap_mod.mod /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_INSTALL -cp -f cice.mk.install /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_INSTALL/cice.mk -make[1]: Leaving directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_SRC/lanl_cice_cap' -test -f /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_INSTALL/cice.mk +mkdir -p /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL +cp -f /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE/liblanl_cice.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL +cp -f libcice.a cice_cap_mod.mod /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL +cp -f cice.mk.install /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/cice.mk +make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_SRC/lanl_cice_cap' +test -f /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/cice.mk ( \ echo "# Do not edit this file. It is automatically generated." ; \ -echo "# Edit the component list or /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf/configure.nems.NUOPC.in" ; \ -echo ; cat "/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf/configure.nems.NUOPC.in" ; \ -echo fms_mk="/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL/fms.mk" ; echo fv3_mk="/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/FV3_INSTALL/fv3.mk" ; echo mom6_mk="/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6_INSTALL/mom6.mk" ; echo cice_mk="/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_INSTALL/cice.mk" ; ) > "/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf/configure.nems.NUOPC" -. /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; \ +echo "# Edit the component list or /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/configure.nems.NUOPC.in" ; \ +echo ; cat "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/configure.nems.NUOPC.in" ; \ +echo fms_mk="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL/fms.mk" ; echo fv3_mk="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/fv3.mk" ; echo mom6_mk="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/mom6.mk" ; echo cice_mk="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/cice.mk" ; ) > "/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/configure.nems.NUOPC" +. /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf/module-setup.sh.inc ; stack=`ulimit -S -s` ; ulimit -S -s 200000 ; module use /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/conf ; module load modules.nems ; module list ; ulimit -S -s $stack ; \ set -e ; \ -for m in /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL/fms.mk /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/FV3_INSTALL/fv3.mk /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6_INSTALL/mom6.mk /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_INSTALL/cice.mk ; do \ +for m in /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL/fms.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/fv3.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/mom6.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/cice.mk ; do \ test -s $m ; \ done ; \ -echo build NEMS after /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL/fms.mk /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/FV3_INSTALL/fv3.mk /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6_INSTALL/mom6.mk /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_INSTALL/cice.mk ; \ -cd /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src ; \ +echo build NEMS after /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL/fms.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/fv3.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/mom6.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/cice.mk ; \ +cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src ; \ make nems \ COMPONENTS="FMS FV3 MOM6 CICE" \ - FMS_DIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL FV3_DIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/FV3_INSTALL MOM6_DIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6_INSTALL CICE_DIR=/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_INSTALL TARGET="/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/exe/NEMS.x" ; \ -test -x /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/exe/NEMS.x + FMS_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL FV3_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL MOM6_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL CICE_DIR=/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL TARGET="/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/exe/NEMS.x" ; \ +test -x /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/exe/NEMS.x Currently Loaded Modules: 1) contrib 6) bacio/2.0.3 11) w3nco/2.0.7 16) png/1.2.44 @@ -274,12 +274,12 @@ Currently Loaded Modules: -build NEMS after /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL/fms.mk /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/FV3_INSTALL/fv3.mk /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6_INSTALL/mom6.mk /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_INSTALL/cice.mk +build NEMS after /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL/fms.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/fv3.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/mom6.mk /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/cice.mk Components in linker order: CICE MOM6 FV3 FMS -CICE: include /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_INSTALL/cice.mk -MOM6: include /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6_INSTALL/mom6.mk -FV3: include /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/FV3_INSTALL/fv3.mk -FMS: include /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL/fms.mk +CICE: include /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/cice.mk +MOM6: include /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/mom6.mk +FV3: include /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/fv3.mk +FMS: include /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL/fms.mk CPPFLAGS += ESMF_VERSION_STRING_GIT="ESMF_8_0_0" CPPFLAGS += ESMF_VERSION_BETASNAPSHOT="'F'" CPPFLAGS += ESMF_VERSION_MINOR="0" @@ -288,33 +288,33 @@ CPPFLAGS += ESMF_VERSION_STRING="8.0.0" CPPFLAGS += ESMF_VERSION_REVISION="0" CPPFLAGS += ESMF_VERSION_MAJOR="8" CPPFLAGS += ESMF_VERSION_PUBLIC="'T'" -make[1]: Entering directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src' +make[1]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src' cd ENS_Cpl && make stub -make[2]: Entering directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/ENS_Cpl' +make[2]: Entering directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/ENS_Cpl' ar rv ENS_Cpl.a ENS_CplComp_ESMFMod_STUB.o r - ENS_CplComp_ESMFMod_STUB.o -make[2]: Leaving directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src/ENS_Cpl' +make[2]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src/ENS_Cpl' echo libgocart is libgocart is echo extlibs is /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libncep_post_v8.0.0_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libnemsio_v2.2.4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libg2_v3.1.1_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libg2tmpl_v1.5.1.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libbacio_v2.0.3_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libsp_v2.0.3_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libw3emc_v2.3.1_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libw3nco_v2.0.7_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libcrtm_v2.2.6.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libpng_v1.2.44.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/gnu/4.8.5/lib/libjasper_v1.900.1.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libz_v1.2.11.a -L/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/lib -Wl,-rpath,/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/lib -lesmf -cxxlib -lrt -ldl -lnetcdff -lnetcdf -qopenmp -L/apps/netcdf/4.7.0/intel/18.0.5.274/lib -lnetcdff -lnetcdf extlibs is /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libncep_post_v8.0.0_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libnemsio_v2.2.4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libg2_v3.1.1_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libg2tmpl_v1.5.1.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libbacio_v2.0.3_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libsp_v2.0.3_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libw3emc_v2.3.1_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libw3nco_v2.0.7_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libcrtm_v2.2.6.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libpng_v1.2.44.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/gnu/4.8.5/lib/libjasper_v1.900.1.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libz_v1.2.11.a -L/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/lib -Wl,-rpath,/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/lib -lesmf -cxxlib -lrt -ldl -lnetcdff -lnetcdf -qopenmp -L/apps/netcdf/4.7.0/intel/18.0.5.274/lib -lnetcdff -lnetcdf -mpiifort -o /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/exe/NEMS.x MAIN_NEMS.o module_NEMS_UTILS.o module_MEDIATOR_methods.o module_MEDIATOR.o module_MEDIATOR_SpaceWeather.o module_EARTH_INTERNAL_STATE.o module_EARTH_GRID_COMP.o module_NEMS_INTERNAL_STATE.o module_NEMS_GRID_COMP.o module_NEMS_Rusage.o nems_c_rusage.o /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_INSTALL/libcice.a /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/CICE_INSTALL/liblanl_cice.a /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6_INSTALL/libmom.a /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/MOM6_INSTALL/lib_ocean.a /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/FV3_INSTALL/libfv3cap.a /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/FV3_INSTALL/libfv3core.a /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/FV3_INSTALL/libfv3io.a /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/FV3_INSTALL/libipd.a /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/FV3_INSTALL/libgfsphys.a /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/FV3_INSTALL/libfv3cpl.a /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FV3/FV3_INSTALL/libstochastic_physics.a /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/FMS/FMS_INSTALL/libfms.a ENS_Cpl/ENS_Cpl.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libncep_post_v8.0.0_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libnemsio_v2.2.4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libg2_v3.1.1_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libg2tmpl_v1.5.1.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libbacio_v2.0.3_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libsp_v2.0.3_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libw3emc_v2.3.1_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libw3nco_v2.0.7_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libcrtm_v2.2.6.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libpng_v1.2.44.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/gnu/4.8.5/lib/libjasper_v1.900.1.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libz_v1.2.11.a -L/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/lib -Wl,-rpath,/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/lib -lesmf -cxxlib -lrt -ldl -lnetcdff -lnetcdf -qopenmp -L/apps/netcdf/4.7.0/intel/18.0.5.274/lib -lnetcdff -lnetcdf +mpiifort -o /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/exe/NEMS.x MAIN_NEMS.o module_NEMS_UTILS.o module_MEDIATOR_methods.o module_MEDIATOR.o module_MEDIATOR_SpaceWeather.o module_EARTH_INTERNAL_STATE.o module_EARTH_GRID_COMP.o module_NEMS_INTERNAL_STATE.o module_NEMS_GRID_COMP.o module_NEMS_Rusage.o nems_c_rusage.o /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/libcice.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/CICE_INSTALL/liblanl_cice.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/libmom.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/MOM6_INSTALL/lib_ocean.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/libfv3cap.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/libfv3core.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/libfv3io.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/libipd.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/libgfsphys.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/libfv3cpl.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FV3/FV3_INSTALL/libstochastic_physics.a /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/FMS/FMS_INSTALL/libfms.a ENS_Cpl/ENS_Cpl.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libncep_post_v8.0.0_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libnemsio_v2.2.4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libg2_v3.1.1_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libg2tmpl_v1.5.1.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libbacio_v2.0.3_4.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libsp_v2.0.3_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libw3emc_v2.3.1_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libw3nco_v2.0.7_d.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libcrtm_v2.2.6.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libpng_v1.2.44.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/gnu/4.8.5/lib/libjasper_v1.900.1.a /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/intel/18.0.5.274/lib/libz_v1.2.11.a -L/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/lib -Wl,-rpath,/scratch1/NCEPDEV/nems/emc.nemspara/soft/esmf/8.0.0-intel18.0.5.274-impi2018.0.4-netcdf4.6.1/lib -lesmf -cxxlib -lrt -ldl -lnetcdff -lnetcdf -qopenmp -L/apps/netcdf/4.7.0/intel/18.0.5.274/lib -lnetcdff -lnetcdf /scratch2/NCEPDEV/nwprod/NCEPLIBS/compilers/gnu/4.8.5/lib/libjasper_v1.900.1.a(jas_stream.o): In function `jas_stream_tmpfile': jas_stream.c:(.text+0x7a7): warning: the use of `tmpnam' is dangerous, better use `mkstemp' -/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/exe/NEMS.x is created. -make[1]: Leaving directory `/scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src' -+ cd /scratch2/NCEPDEV/ocean/Denise.Worthen/FMC_newmaster/NEMS/src -+ cp -fp ../exe/NEMS.x /scratch2/NCEPDEV/stmp1/Denise.Worthen/rtgen.86760/exec/fv3_mom6_cice.exe -+ cp -fp conf/modules.nems /scratch2/NCEPDEV/stmp1/Denise.Worthen/rtgen.86760/include/modules_fv3_mom6_cice -+ md5sum /scratch2/NCEPDEV/stmp1/Denise.Worthen/rtgen.86760/exec/fv3_mom6_cice.exe +/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/exe/NEMS.x is created. +make[1]: Leaving directory `/scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src' ++ cd /scratch2/NCEPDEV/climate/Denise.Worthen/WORK/S2S_model/NEMS/src ++ cp -fp ../exe/NEMS.x /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe ++ cp -fp conf/modules.nems /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/include/modules_fv3_mom6_cice ++ md5sum /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe + unset md5sum + unset OPTS + set -xe + set -xe -+ test -s /scratch2/NCEPDEV/stmp1/Denise.Worthen/rtgen.86760/exec/fv3_mom6_cice.exe -+ test -x /scratch2/NCEPDEV/stmp1/Denise.Worthen/rtgen.86760/exec/fv3_mom6_cice.exe ++ test -s /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe ++ test -x /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe _______________________________________________________________ -Start Epilog v19.07.23 on node h1c16 for job 661943 :: Fri Nov 8 17:26:22 UTC 2019 -Job 661943 (not serial) finished for user Denise.Worthen in partition hera with exit code 0:0 +Start Epilog v19.07.23 on node h14c34 for job 753347 :: Wed Nov 13 15:40:43 UTC 2019 +Job 753347 (not serial) finished for user Denise.Worthen in partition hera with exit code 0:0 _______________________________________________________________ -End Epilogue v19.07.23 Fri Nov 8 17:26:22 UTC 2019 +End Epilogue v19.07.23 Wed Nov 13 15:40:43 UTC 2019 diff --git a/log/report-hera.intel-log/rtreport.txt b/log/report-hera.intel-log/rtreport.txt index 8e6f592d..6c65f460 100755 --- a/log/report-hera.intel-log/rtreport.txt +++ b/log/report-hera.intel-log/rtreport.txt @@ -1,15 +1,18 @@ Run rocotostat... Generate report... -WORKFLOW STARTED AT Fri Nov 8 17:25:19 2019 (+1573233919) +WORKFLOW STARTED AT Wed Nov 13 15:39:46 2019 (+1573659586) Repository information: REPO TOP: -master 7763bd7 [origin/master] Updating MOM6 submodules to point to NOAA-EMC Other updates for running compsets on wcoss-phase2 and updates to match fv3atm commit on ufs-weather-app -Fetch URL: gerrit:EMC_FV3-MOM6-CICE5 - D compsets/benchmark2_cold.input - D compsets/benchmark2_warm.input - M compsets/fv3mom6cice5.input +feature/update_compsets 9f503e9 Updated README.md +Fetch URL: https://github.com/DeniseWorthen/ufs-s2s-model.git + M compsets/all.input + M compsets/benchmark_cold.input + M compsets/benchmark_warm.input + M compsets/cpld_fv3_mom6_cice_2d_atm_flux.input + M compsets/cpld_fv3_mom6_cice_cold_atm_flux.input + M compsets/datesuite_warm.input M log/report-hera.intel-log/build_fv3_mom6_cice.exe.log M log/report-hera.intel-log/rtreport.txt @@ -41,8 +44,8 @@ Fetch URL: https://github.com/noaa-psd/stochastic_physics BUILD fv3_mom6_cice.exe: SUCCEEDED TEST #1: PASS - Test cpld_fv3_384_mom6_cice_2d_atm_flux starting at Fri Nov 8 17:27:21 UTC 2019 (Fully coupled FV3-MOM6-CICE system - 2d_warm) - Fri Nov 8 17:27:21 UTC 2019 + Test cpld_fv3_384_mom6_cice_2d_atm_flux starting at Wed Nov 13 16:03:55 UTC 2019 (Fully coupled FV3-MOM6-CICE system - 2d_warm) + Wed Nov 13 16:03:55 UTC 2019 phyf048.tile1.nc: bit-for-bit identical phyf048.tile2.nc: bit-for-bit identical phyf048.tile3.nc: bit-for-bit identical @@ -56,14 +59,14 @@ TEST #1: PASS dynf048.tile5.nc: bit-for-bit identical dynf048.tile6.nc: bit-for-bit identical Executable did not change during test suite: - File: /scratch2/NCEPDEV/stmp1/Denise.Worthen/rtgen.86760/exec/fv3_mom6_cice.exe - Expected md5sum: 5d3e0efa487527efac2d7e32d3d0a113 - Actual md5sum: 5d3e0efa487527efac2d7e32d3d0a113 - TEST PASSED AT Fri Nov 8 18:17:53 UTC 2019 + File: /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe + Expected md5sum: fa0dba069b6668cf64f6e10529c0e5e1 + Actual md5sum: fa0dba069b6668cf64f6e10529c0e5e1 + TEST PASSED AT Wed Nov 13 16:53:43 UTC 2019 TEST #2: PASS - Test cpld_fv3_384_mom6_cice_cold_atm_flux starting at Fri Nov 8 17:27:18 UTC 2019 (Fully coupled FV3-MOM6-CICE system - cold 384) - Fri Nov 8 17:27:18 UTC 2019 + Test cpld_fv3_384_mom6_cice_cold_atm_flux starting at Wed Nov 13 15:48:25 UTC 2019 (Fully coupled FV3-MOM6-CICE system - cold 384) + Wed Nov 13 15:48:25 UTC 2019 phyf001.tile1.nc: bit-for-bit identical phyf001.tile2.nc: bit-for-bit identical phyf001.tile3.nc: bit-for-bit identical @@ -119,14 +122,14 @@ TEST #2: PASS mediator_FBOcn_o_restart.nc: bit-for-bit identical mediator_scalars_restart.txt: bit-for-bit identical Executable did not change during test suite: - File: /scratch2/NCEPDEV/stmp1/Denise.Worthen/rtgen.86760/exec/fv3_mom6_cice.exe - Expected md5sum: 5d3e0efa487527efac2d7e32d3d0a113 - Actual md5sum: 5d3e0efa487527efac2d7e32d3d0a113 - TEST PASSED AT Fri Nov 8 17:33:06 UTC 2019 + File: /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe + Expected md5sum: fa0dba069b6668cf64f6e10529c0e5e1 + Actual md5sum: fa0dba069b6668cf64f6e10529c0e5e1 + TEST PASSED AT Wed Nov 13 15:54:21 UTC 2019 TEST #3: PASS - Test cpld_fv3_mom6_cice_cold_atm_flux starting at Fri Nov 8 17:27:18 UTC 2019 (Fully coupled FV3-MOM6-CICE system - cold start) - Fri Nov 8 17:27:18 UTC 2019 + Test cpld_fv3_mom6_cice_cold_atm_flux starting at Wed Nov 13 15:48:25 UTC 2019 (Fully coupled FV3-MOM6-CICE system - cold start) + Wed Nov 13 15:48:25 UTC 2019 phyf001.tile1.nc: bit-for-bit identical phyf001.tile2.nc: bit-for-bit identical phyf001.tile3.nc: bit-for-bit identical @@ -182,14 +185,14 @@ TEST #3: PASS mediator_FBOcn_o_restart.nc: bit-for-bit identical mediator_scalars_restart.txt: bit-for-bit identical Executable did not change during test suite: - File: /scratch2/NCEPDEV/stmp1/Denise.Worthen/rtgen.86760/exec/fv3_mom6_cice.exe - Expected md5sum: 5d3e0efa487527efac2d7e32d3d0a113 - Actual md5sum: 5d3e0efa487527efac2d7e32d3d0a113 - TEST PASSED AT Fri Nov 8 17:29:49 UTC 2019 + File: /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe + Expected md5sum: fa0dba069b6668cf64f6e10529c0e5e1 + Actual md5sum: fa0dba069b6668cf64f6e10529c0e5e1 + TEST PASSED AT Wed Nov 13 15:51:04 UTC 2019 TEST #4: PASS - Test cpld_fv3_mom6_cice_2d_atm_flux starting at Fri Nov 8 17:27:18 UTC 2019 (Fully coupled FV3-MOM6-CICE system - 2d_warm) - Fri Nov 8 17:27:18 UTC 2019 + Test cpld_fv3_mom6_cice_2d_atm_flux starting at Wed Nov 13 16:06:32 UTC 2019 (Fully coupled FV3-MOM6-CICE system - 2d_warm) + Wed Nov 13 16:06:32 UTC 2019 phyf048.tile1.nc: bit-for-bit identical phyf048.tile2.nc: bit-for-bit identical phyf048.tile3.nc: bit-for-bit identical @@ -203,11 +206,11 @@ TEST #4: PASS dynf048.tile5.nc: bit-for-bit identical dynf048.tile6.nc: bit-for-bit identical Executable did not change during test suite: - File: /scratch2/NCEPDEV/stmp1/Denise.Worthen/rtgen.86760/exec/fv3_mom6_cice.exe - Expected md5sum: 5d3e0efa487527efac2d7e32d3d0a113 - Actual md5sum: 5d3e0efa487527efac2d7e32d3d0a113 - TEST PASSED AT Fri Nov 8 17:44:35 UTC 2019 -WORKFLOW REPORT AT Fri Nov 8 18:19:26 2019 (+1573237166) + File: /scratch2/NCEPDEV/stmp1/Denise.Worthen/RTS/rtgen.158979/exec/fv3_mom6_cice.exe + Expected md5sum: fa0dba069b6668cf64f6e10529c0e5e1 + Actual md5sum: fa0dba069b6668cf64f6e10529c0e5e1 + TEST PASSED AT Wed Nov 13 16:23:36 UTC 2019 +WORKFLOW REPORT AT Wed Nov 13 16:54:52 2019 (+1573664092) Tests: 0 failed, 4 passed out of 4 Builds: 0 failed, 1 passed out of 1 REGRESSION TEST WAS SUCCESSFUL