From 240c55193fb0e9a948f7e0f8b0f958ba55ab5645 Mon Sep 17 00:00:00 2001
From: joey0320 <joonho0320@gmail.com>
Date: Fri, 14 Apr 2023 11:32:41 -0700
Subject: [PATCH 01/14] add python script, wip

---
 scripts/uniqify-module-names.py | 105 ++++++++++++++++++++++++++++++++
 1 file changed, 105 insertions(+)
 create mode 100755 scripts/uniqify-module-names.py

diff --git a/scripts/uniqify-module-names.py b/scripts/uniqify-module-names.py
new file mode 100755
index 0000000000..7269c63fe7
--- /dev/null
+++ b/scripts/uniqify-module-names.py
@@ -0,0 +1,105 @@
+#!/usr/bin/env python3
+
+import json
+import argparse
+import shutil
+import os
+import sh
+
+
+
+parser = argparse.ArgumentParser(description="")
+parser.add_argument("--top-filelist", type=str, required=True, help="Abs path to <top>.<model>.top.f")
+parser.add_argument("--mod-filelist", type=str, required=True, help="Abs path to <top>.<model>.model.f")
+parser.add_argument("--gen-collateral-path", dest="gcpath", type=str, required=True, help="Abs path to the gen-collateral directory")
+parser.add_argument("--model-hier-json", type=str, required=True, help="Path to hierarchy JSON emitted by firtool. Must include DUT as a module.")
+parser.add_argument('--dut', type=str, required=True, help='Name of the DUT module.')
+parser.add_argument('--model', type=str, required=True, help='Name of the MODEL module.')
+args = parser.parse_args()
+
+
+def get_filelist(filelist):
+  f = open(filelist, "r")
+  lines = f.readlines()
+  f.close()
+
+  fnames = []
+  for line in lines:
+    try:
+      fname = line.split("/")[-1].replace("\n", "")
+      fnames.append(fname)
+    except:
+      print(f"Something is wrong about this line {line}")
+
+  return fnames
+
+
+def generate_copy(c, sfx):
+  (cur_name, ext) = os.path.splitext(c)
+  new_name = cur_name + "_" + sfx
+  new_file = new_name + ext
+
+  cur_file = os.path.join(args.gcpath, c)
+  new_file = os.path.join(args.gcpath, new_file)
+
+  shutil.copy(cur_file, new_file)
+  sh.sed("-i", f"s/{cur_name}/{new_name}/", new_file)
+
+  return new_file
+
+
+
+def dfs_update_modules(tree, common_fnames, visited):
+  # List of direct submodules to update
+  childs_to_update = list()
+  for child in tree['instances']:
+    if (child['module_name'] == args.dut) or (child['module_name'] in visited):
+      continue
+    if dfs_update_modules(child, common_fnames, visited):
+      childs_to_update.append(child['module_name'])
+
+  cur_module = tree['module_name']
+  cur_file = cur_module + ".sv"
+  new_file = None
+
+  # cur_file is in the common list, generate a new file
+  for c in common_fnames:
+    if cur_file == c:
+      new_file = generate_copy(c, "Model")
+
+  # has some child to update, but new_file wasn't generated
+  if (new_file is None) and len(childs_to_update) > 0:
+    if cur_module == args.model:
+      new_file = os.path.join(args.gcpath, cur_file)
+    else:
+      new_file = generate_copy(cur_file, "Model")
+
+  if new_file is not None:
+    print(f"-- {cur_module}")
+
+  for submodule_name in childs_to_update:
+    print(f"|- {submodule_name}")
+    sh.sed("-i", f"s/{submodule_name}/{submodule_name}_Model/", new_file)
+
+  visited.add(cur_module)
+  return (new_file is not None)
+
+
+def main():
+  top_fnames = set(get_filelist(args.top_filelist))
+  mod_fnames = set(get_filelist(args.mod_filelist))
+
+  common_fnames = top_fnames.intersection(mod_fnames)
+  for c in common_fnames:
+    print(c)
+
+  imhj = open(args.model_hier_json, "r")
+  imhj_data = json.load(imhj)
+
+  visited = set()
+  dfs_update_modules(imhj_data, common_fnames, visited)
+
+
+
+if __name__ == "__main__":
+  main()

From e59ed50abb7f0d6bf4b1da7669e5cdafc8e27e1d Mon Sep 17 00:00:00 2001
From: joey0320 <joonho0320@gmail.com>
Date: Fri, 14 Apr 2023 16:44:30 -0700
Subject: [PATCH 02/14] script to unqify modules

---
 common.mk                       |  6 +++++
 scripts/uniqify-module-names.py | 40 +++++++++++++++++++--------------
 2 files changed, 29 insertions(+), 17 deletions(-)

diff --git a/common.mk b/common.mk
index a4668075dc..ed02a10e2c 100644
--- a/common.mk
+++ b/common.mk
@@ -243,6 +243,12 @@ $(TOP_MODS_FILELIST) $(MODEL_MODS_FILELIST) $(ALL_MODS_FILELIST) $(BB_MODS_FILEL
 	$(SED) -i 's/\.\///' $(TOP_MODS_FILELIST)
 	$(SED) -i 's/\.\///' $(MODEL_MODS_FILELIST)
 	$(SED) -i 's/\.\///' $(BB_MODS_FILELIST)
+	$(base_dir)/scripts/uniqify-module-names.py \
+		--top-filelist $(TOP_MODS_FILELIST) \
+		--mod-filelist $(MODEL_MODS_FILELIST) \
+		--gen-collateral-path $(GEN_COLLATERAL_DIR) \
+		--model-hier-json $(MFC_MODEL_HRCHY_JSON) \
+		--dut $(TOP)
 	sort -u $(TOP_MODS_FILELIST) $(MODEL_MODS_FILELIST) $(BB_MODS_FILELIST) > $(ALL_MODS_FILELIST)
 
 $(TOP_BB_MODS_FILELIST) $(MODEL_BB_MODS_FILELIST) &: $(BB_MODS_FILELIST) $(MFC_TOP_HRCHY_JSON) $(FINAL_ANNO_FILE)
diff --git a/scripts/uniqify-module-names.py b/scripts/uniqify-module-names.py
index 7269c63fe7..a88d4147ce 100755
--- a/scripts/uniqify-module-names.py
+++ b/scripts/uniqify-module-names.py
@@ -14,7 +14,6 @@
 parser.add_argument("--gen-collateral-path", dest="gcpath", type=str, required=True, help="Abs path to the gen-collateral directory")
 parser.add_argument("--model-hier-json", type=str, required=True, help="Path to hierarchy JSON emitted by firtool. Must include DUT as a module.")
 parser.add_argument('--dut', type=str, required=True, help='Name of the DUT module.')
-parser.add_argument('--model', type=str, required=True, help='Name of the MODEL module.')
 args = parser.parse_args()
 
 
@@ -33,6 +32,9 @@ def get_filelist(filelist):
 
   return fnames
 
+def update_filelist(cur_file, new_file):
+  sh.sed("-i", f"s/\b{cur_file}\b/{new_file}/", os.path.join(args.gcpath, args.mod_filelist))
+
 
 def generate_copy(c, sfx):
   (cur_name, ext) = os.path.splitext(c)
@@ -43,43 +45,45 @@ def generate_copy(c, sfx):
   new_file = os.path.join(args.gcpath, new_file)
 
   shutil.copy(cur_file, new_file)
-  sh.sed("-i", f"s/{cur_name}/{new_name}/", new_file)
-
+  sh.sed("-i", f"s/\b{cur_name}\b/{new_name}/", new_file)
   return new_file
 
 
 
-def dfs_update_modules(tree, common_fnames, visited):
+def dfs_update_modules(tree, common_fnames, visited, top_fnames, updated_modules):
   # List of direct submodules to update
   childs_to_update = list()
   for child in tree['instances']:
+    # We don't have to change stuff that are under the dut
     if (child['module_name'] == args.dut) or (child['module_name'] in visited):
       continue
-    if dfs_update_modules(child, common_fnames, visited):
+    if dfs_update_modules(child, common_fnames, visited, top_fnames, updated_modules):
       childs_to_update.append(child['module_name'])
+      if (child['module_name'] + ".sv") in common_fnames:
+        child['module_name'] = child['module_name'] + "_Model"
+        updated_modules.append(child['module_name'])
 
   cur_module = tree['module_name']
   cur_file = cur_module + ".sv"
   new_file = None
 
   # cur_file is in the common list, generate a new file
-  for c in common_fnames:
-    if cur_file == c:
-      new_file = generate_copy(c, "Model")
+  if cur_file in common_fnames:
+    new_file = generate_copy(cur_file, "Model")
+    update_filelist(cur_file, os.path.basename(new_file))
 
   # has some child to update, but new_file wasn't generated
   if (new_file is None) and len(childs_to_update) > 0:
-    if cur_module == args.model:
-      new_file = os.path.join(args.gcpath, cur_file)
-    else:
-      new_file = generate_copy(cur_file, "Model")
+    new_file = os.path.join(args.gcpath, cur_file)
+    assert(cur_file not in top_fnames)
 
   if new_file is not None:
     print(f"-- {cur_module}")
 
   for submodule_name in childs_to_update:
     print(f"|- {submodule_name}")
-    sh.sed("-i", f"s/{submodule_name}/{submodule_name}_Model/", new_file)
+    if (submodule_name + ".sv") in common_fnames:
+      sh.sed("-i", f"s/\b{submodule_name}\b/{submodule_name}_Model/", new_file)
 
   visited.add(cur_module)
   return (new_file is not None)
@@ -88,16 +92,18 @@ def dfs_update_modules(tree, common_fnames, visited):
 def main():
   top_fnames = set(get_filelist(args.top_filelist))
   mod_fnames = set(get_filelist(args.mod_filelist))
-
   common_fnames = top_fnames.intersection(mod_fnames)
-  for c in common_fnames:
-    print(c)
 
   imhj = open(args.model_hier_json, "r")
   imhj_data = json.load(imhj)
 
   visited = set()
-  dfs_update_modules(imhj_data, common_fnames, visited)
+  updated_modules = list()
+  dfs_update_modules(imhj_data, common_fnames, visited, top_fnames, updated_modules)
+
+  out_file = open(args.model_hier_json, "w")
+  json.dump(imhj_data, out_file, indent=2)
+  out_file.close()
 
 
 

From c204e4a3e4132c9014cbe0f943f09decfcd18a19 Mon Sep 17 00:00:00 2001
From: joey0320 <joonho0320@gmail.com>
Date: Fri, 14 Apr 2023 16:44:54 -0700
Subject: [PATCH 03/14] rm print

---
 scripts/uniqify-module-names.py | 4 ----
 1 file changed, 4 deletions(-)

diff --git a/scripts/uniqify-module-names.py b/scripts/uniqify-module-names.py
index a88d4147ce..260f8fd3da 100755
--- a/scripts/uniqify-module-names.py
+++ b/scripts/uniqify-module-names.py
@@ -77,11 +77,7 @@ def dfs_update_modules(tree, common_fnames, visited, top_fnames, updated_modules
     new_file = os.path.join(args.gcpath, cur_file)
     assert(cur_file not in top_fnames)
 
-  if new_file is not None:
-    print(f"-- {cur_module}")
-
   for submodule_name in childs_to_update:
-    print(f"|- {submodule_name}")
     if (submodule_name + ".sv") in common_fnames:
       sh.sed("-i", f"s/\b{submodule_name}\b/{submodule_name}_Model/", new_file)
 

From 632a8957ffd7666e8fdea566a1ff30b7d913b416 Mon Sep 17 00:00:00 2001
From: joey0320 <joonho0320@gmail.com>
Date: Fri, 14 Apr 2023 21:24:08 -0700
Subject: [PATCH 04/14] add sh to conda env

---
 conda-reqs/chipyard.yaml                      |    1 +
 ...ements-riscv-tools-linux-64.conda-lock.yml | 1135 ++++++++++-------
 2 files changed, 697 insertions(+), 439 deletions(-)

diff --git a/conda-reqs/chipyard.yaml b/conda-reqs/chipyard.yaml
index 59c5de5147..7b928cae64 100644
--- a/conda-reqs/chipyard.yaml
+++ b/conda-reqs/chipyard.yaml
@@ -39,6 +39,7 @@ dependencies:
     - coreutils
     - jq
     - pip
+    - sh
 
     # firemarshal deps
     - qemu # from ucb-bar channel - https://github.com/ucb-bar/qemu-feedstock
diff --git a/conda-reqs/conda-lock-reqs/conda-requirements-riscv-tools-linux-64.conda-lock.yml b/conda-reqs/conda-lock-reqs/conda-requirements-riscv-tools-linux-64.conda-lock.yml
index ca4c96d264..22625f5a13 100644
--- a/conda-reqs/conda-lock-reqs/conda-requirements-riscv-tools-linux-64.conda-lock.yml
+++ b/conda-reqs/conda-lock-reqs/conda-requirements-riscv-tools-linux-64.conda-lock.yml
@@ -7,9 +7,9 @@
 # Install this environment as "YOURENV" with:
 #     conda-lock install -n YOURENV --file conda-requirements-riscv-tools-linux-64.conda-lock.yml
 # To update a single package to the latest version compatible with the version constraints in the source:
-#     conda-lock lock  --lockfile conda-requirements-riscv-tools-linux-64.conda-lock.yml --update PACKAGE
+#     conda-lock lock --lockfile conda-requirements-riscv-tools-linux-64.conda-lock.yml --update PACKAGE
 # To re-solve the entire environment, e.g. after changing a version constraint in the source file:
-#     conda-lock -f /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/chipyard.yaml -f /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/riscv-tools.yaml --lockfile conda-requirements-riscv-tools-linux-64.conda-lock.yml
+#     conda-lock -f /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/chipyard.yaml -f /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/riscv-tools.yaml -f /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/chipyard.yaml -f /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/riscv-tools.yaml --lockfile conda-requirements-riscv-tools-linux-64.conda-lock.yml
 metadata:
   channels:
   - url: ucb-bar
@@ -21,12 +21,14 @@ metadata:
   - url: nodefaults
     used_env_vars: []
   content_hash:
-    linux-64: 1a7b0ae002798a28682d700644302284790c06503a7d3d04caa019aa74da7123
+    linux-64: 94be5f8cad4026c00d3aef6c3690da6cc358bc79c1f7398049754bd17e861420
   platforms:
   - linux-64
   sources:
   - /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/chipyard.yaml
   - /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/riscv-tools.yaml
+  - /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/chipyard.yaml
+  - /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/riscv-tools.yaml
 package:
 - category: main
   dependencies: {}
@@ -185,14 +187,14 @@ package:
 - category: main
   dependencies: {}
   hash:
-    md5: 7697d37e29669a14b053e82fad22a16b
-    sha256: ac993fa2774b90befcd6aba55b1c08853b2fa3b818753094c09bebd35fc55532
+    md5: 0299e410bfb4300540bdc0012a7985ef
+    sha256: 8572efb7092c72fe7b73d2a0f1e5e27159a8edea0371e1bef533bcb7d85b19c6
   manager: conda
   name: open_pdks.sky130a
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/litex-hub/noarch/open_pdks.sky130a-1.0.402_1_g12df12e-20230225_164303.tar.bz2
-  version: 1.0.402_1_g12df12e
+  url: https://conda.anaconda.org/litex-hub/noarch/open_pdks.sky130a-1.0.406_0_g0c37b7c-20230412_103222.tar.bz2
+  version: 1.0.406_0_g0c37b7c
 - category: main
   dependencies: {}
   hash:
@@ -207,14 +209,14 @@ package:
 - category: main
   dependencies: {}
   hash:
-    md5: 51fc4fcfb19f5d95ffc8c339db5068e8
-    sha256: 0bfae0b9962bc0dbf79048f9175b913ed4f53c4310d06708dc7acbb290ad82f6
+    md5: 939e3e74d8be4dac89ce83b20de2492a
+    sha256: 0449138224adfa125b220154408419ec37c06b0b49f63c5954724325903ecf55
   manager: conda
   name: tzdata
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/tzdata-2022g-h191b570_0.conda
-  version: 2022g
+  url: https://conda.anaconda.org/conda-forge/noarch/tzdata-2023c-h71feb2d_0.conda
+  version: 2023c
 - category: main
   dependencies:
     font-ttf-dejavu-sans-mono: ''
@@ -420,25 +422,13 @@ package:
     libstdcxx-ng: '>=12'
   hash:
     md5: 6bfb79319763a11c7423c9d0e0ee00b7
+    sha256: null
   manager: conda
   name: dromajo
   optional: false
   platform: linux-64
   url: https://conda.anaconda.org/ucb-bar/linux-64/dromajo-1.0.0-0_h1234567_g6a6e34e.tar.bz2
   version: 1.0.0
-- category: main
-  dependencies:
-    libgcc-ng: '>=12'
-    libstdcxx-ng: '>=12'
-  hash:
-    md5: c4fbad8d4bddeb3c085f18cbf97fbfad
-    sha256: b44db0b92ae926b3fbbcd57c179fceb64fa11a9f9d09082e03be58b74dcad832
-  manager: conda
-  name: expat
-  optional: false
-  platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/linux-64/expat-2.5.0-h27087fc_0.tar.bz2
-  version: 2.5.0
 - category: main
   dependencies:
     libgcc-ng: '>=7.5.0'
@@ -528,17 +518,17 @@ package:
   version: '1.12'
 - category: main
   dependencies:
-    libgcc-ng: '>=10.3.0'
-    libstdcxx-ng: '>=10.3.0'
+    libgcc-ng: '>=12'
+    libstdcxx-ng: '>=12'
   hash:
-    md5: 87473a15119779e021c314249d4b4aed
-    sha256: 1d7950f3be4637ab915d886304e57731d39a41ab705ffc95c4681655c459374a
+    md5: 7c8d20d847bb45f56bd941578fcfa146
+    sha256: e44cc00eec068e7f7a6dd117ba17bf5d57658729b7b841945546f82505138292
   manager: conda
   name: icu
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/linux-64/icu-70.1-h27087fc_0.tar.bz2
-  version: '70.1'
+  url: https://conda.anaconda.org/conda-forge/linux-64/icu-72.1-hcb278e6_0.conda
+  version: '72.1'
 - category: main
   dependencies:
     libgcc-ng: '>=12'
@@ -592,14 +582,14 @@ package:
   dependencies:
     libgcc-ng: '>=12'
   hash:
-    md5: 5cc781fd91968b11a8a7fdbee0982676
-    sha256: f9983a8ea03531f2c14bce76c870ca325c0fddf0c4e872bff1f78bc52624179c
+    md5: 6aa9c9de5542ecb07fdda9ca626252d8
+    sha256: 949d84ceea543802c1e085b2aa58f1d6cb5dd8cec5a9abaaf4e8ac65d6094b3a
   manager: conda
   name: libdeflate
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.17-h0b41bf4_0.conda
-  version: '1.17'
+  url: https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.18-h0b41bf4_0.conda
+  version: '1.18'
 - category: main
   dependencies:
     libgcc-ng: '>=7.5.0'
@@ -612,6 +602,18 @@ package:
   platform: linux-64
   url: https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-h516909a_1.tar.bz2
   version: '4.33'
+- category: main
+  dependencies:
+    libgcc-ng: '>=12'
+  hash:
+    md5: 6305a3dd2752c76335295da4e581f2fd
+    sha256: 74c98a563777ae2ad71f1f74d458a8ab043cee4a513467c159ccf159d0e461f3
+  manager: conda
+  name: libexpat
+  optional: false
+  platform: linux-64
+  url: https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.5.0-hcb278e6_1.conda
+  version: 2.5.0
 - category: main
   dependencies:
     libgcc-ng: '>=12'
@@ -648,6 +650,18 @@ package:
   platform: linux-64
   url: https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-h166bdaf_0.tar.bz2
   version: '1.17'
+- category: main
+  dependencies:
+    libgcc-ng: '>=12'
+  hash:
+    md5: 1edd9e67bdb90d78cea97733ff6b54e6
+    sha256: b19de7bda34eac4fa931be11fa8d7640cdf1441dfd51c91786586a4a4c64c92f
+  manager: conda
+  name: libjpeg-turbo
+  optional: false
+  platform: linux-64
+  url: https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-2.1.5.1-h0b41bf4_0.conda
+  version: 2.1.5.1
 - category: main
   dependencies:
     libgcc-ng: '>=9.4.0'
@@ -736,16 +750,16 @@ package:
   version: 0.9.10
 - category: main
   dependencies:
-    libgcc-ng: '>=9.3.0'
+    libgcc-ng: '>=12'
   hash:
-    md5: 772d69f030955d9646d3d0eaf21d859d
-    sha256: 54f118845498353c936826f8da79b5377d23032bcac8c4a02de2019e26c3f6b3
+    md5: 40b61aab5c7ba9ff276c41cfffe6b80b
+    sha256: 787eb542f055a2b3de553614b25f09eefb0a0931b0c87dbcce6efdfd92f04f18
   manager: conda
   name: libuuid
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.32.1-h7f98852_1000.tar.bz2
-  version: 2.32.1
+  url: https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda
+  version: 2.38.1
 - category: main
   dependencies:
     libgcc-ng: '>=12'
@@ -762,14 +776,14 @@ package:
   dependencies:
     libgcc-ng: '>=12'
   hash:
-    md5: ac2ccf7323d21f2994e4d1f5da664f37
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-  url: https://conda.anaconda.org/conda-forge/noarch/aws-sam-translator-1.55.0-pyhd8ed1ab_0.conda
-  version: 1.55.0
+  url: https://conda.anaconda.org/conda-forge/noarch/aws-sam-translator-1.64.0-pyhd8ed1ab_0.conda
+  version: 1.64.0
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   name: boto3-stubs
   optional: false
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-  url: https://conda.anaconda.org/conda-forge/noarch/boto3-stubs-1.26.95-pyhd8ed1ab_0.conda
-  version: 1.26.95
+  url: https://conda.anaconda.org/conda-forge/noarch/boto3-stubs-1.26.114-pyhd8ed1ab_0.conda
+  version: 1.26.114
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   name: mypy-boto3-s3
   optional: false
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-  url: https://conda.anaconda.org/conda-forge/noarch/mypy-boto3-s3-1.26.62-pyhd8ed1ab_0.conda
-  version: 1.26.62
+  url: https://conda.anaconda.org/conda-forge/noarch/mypy-boto3-s3-1.26.104-pyhd8ed1ab_0.conda
+  version: 1.26.104
 - category: main
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     python: '>=3.6'
     typing-extensions: ''
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-    sha256: 7e7bb339939a50d9e682c01938062d2d4e1157a7b034d7f91e44e11d98c0d05d
+    md5: 93e899cf501d962cfd1b251a45416825
+    sha256: ef57856f4313eac453b53a119cedf121bd16fc98c64beaee8e3309959673daea
   manager: conda
   name: mypy_boto3_ec2
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/mypy_boto3_ec2-1.26.91-pyhd8ed1ab_0.conda
-  version: 1.26.91
+  url: https://conda.anaconda.org/conda-forge/noarch/mypy_boto3_ec2-1.26.106-pyhd8ed1ab_0.conda
+  version: 1.26.106
+- category: main
+  dependencies:
+    boto3: ''
+    fsspec: '>=0.6.0'
+    python: '>=3.5'
+  hash:
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+    sha256: 7a4cb574ff7edf773e5e4c396733dcb08ffcfd6e4f8b27e5b84b35fd4666ef5b
+  manager: conda
+  name: s3fs
+  optional: false
+  platform: linux-64
+  url: https://conda.anaconda.org/conda-forge/noarch/s3fs-0.4.2-py_0.tar.bz2
+  version: 0.4.2
 - category: main
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     docutils: <0.19
@@ -5348,24 +5590,26 @@ package:
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 - category: main
   dependencies:
-    aws-sam-translator: '>=1.55.0'
+    aws-sam-translator: '>=1.62.0'
     jschema-to-python: ~=1.2.3
     jsonpatch: ''
     jsonschema: '>=3.0,<5'
     junit-xml: ~=1.9
-    networkx: ~=2.4
+    networkx: ~=2.4,<4
     python: '>=3.7'
     pyyaml: '>5.4'
+    regex: ''
     sarif-om: ~=1.0.4
+    sympy: '>=1.0.0'
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   name: cfn-lint
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/cfn-lint-0.75.1-pyhd8ed1ab_0.conda
-  version: 0.75.1
+  url: https://conda.anaconda.org/conda-forge/noarch/cfn-lint-0.77.0-pyhd8ed1ab_0.conda
+  version: 0.77.0
 - category: main
   dependencies:
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@@ -5395,14 +5639,14 @@ package:
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-    sha256: 5f7094094ef361b135068b12facdf34c18d2b285c4bd87a935ab1c7e633990ee
+    md5: 32f26257ac824d26493bf387694eb35d
+    sha256: 86f6ae6a96d28ca6e1e72790e1bf6d33b2ec1ba9274619283d29a593a34494fe
   manager: conda
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   optional: false
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-  url: https://conda.anaconda.org/conda-forge/noarch/moto-4.1.5-pyhd8ed1ab_0.conda
-  version: 4.1.5
+  url: https://conda.anaconda.org/conda-forge/noarch/moto-4.1.7-pyhd8ed1ab_0.conda
+  version: 4.1.7
 - category: main
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   optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/e6/88/8a05e7ad0bb823246b2add3d2e97f990c41c71a40762c8db77a4bd78eedf/mock-5.0.1-py3-none-any.whl
   version: 5.0.1
 - dependencies: {}
@@ -5419,6 +5664,7 @@ package:
   manager: pip
   name: pyyaml
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/02/25/6ba9f6bb50a3d4fbe22c1a02554dc670682a07c8701d1716d19ddea2c940/PyYAML-6.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl
   version: '6.0'
 - category: main
@@ -5430,6 +5676,7 @@ package:
   name: asttokens
   optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/f3/e1/64679d9d0759db5b182222c81ff322c2fe2c31e156a59afd6e9208c960e5/asttokens-2.2.1-py2.py3-none-any.whl
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 - category: main
@@ -5441,6 +5688,7 @@ package:
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   optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/1d/e4/97b8add92fbec2a9890ad4777272e9a9e4d7a0ceeac42b7e1febe94f0e86/gdspy-1.4.zip
   version: '1.4'
 - category: main
@@ -5453,15 +5701,19 @@ package:
   name: paramiko-ng
   optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/9f/53/1ac75eab589149b1e02e38185ecebf09e1b805fc3fdeadbc16d1a2b7d208/paramiko_ng-2.8.10-py2.py3-none-any.whl
   version: 2.8.10
-- dependencies:
+- category: main
+  dependencies:
     ruamel.yaml.clib: '>=0.2.6'
   hash:
     sha256: 742b35d3d665023981bd6d16b3d24248ce5df75fdb4e2924e93a05c1f8b61ca7
   manager: pip
   name: ruamel.yaml
+  optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/9e/cb/938214ac358fbef7058343b3765c79a1b7ed0c366f7f992ce7ff38335652/ruamel.yaml-0.17.21-py3-none-any.whl
   version: 0.17.21
 - category: main
@@ -5474,6 +5726,7 @@ package:
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   optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/dd/ae/eb28ee3b6768e51cb938abcf521cb678217203f33385a2df54d3f23331c5/sure-2.0.1.tar.gz
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@@ -5486,6 +5739,7 @@ package:
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   optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/6b/0f/efc537eebfd2a2c470250c0ac8bd8a05ffc13d95a7fb22021367890d7c46/fab_classic-1.19.2-py2.py3-none-any.whl
   version: 1.19.2
 - category: main
@@ -5501,6 +5755,7 @@ package:
   name: hammer-vlsi
   optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/53/39/18367e6fb4f20e9ae4fb3097f7b80704ff5cccf62980ea2871ba1d817a74/hammer_vlsi-1.1.0-py3-none-any.whl
   version: 1.1.0
 - category: main
@@ -5513,6 +5768,7 @@ package:
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   optional: false
   platform: linux-64
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 - category: main
@@ -5525,6 +5781,7 @@ package:
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   optional: false
   platform: linux-64
+  source: null
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 version: 1

From 611de45cb19946aa606e9b34a8069759f7eb9f21 Mon Sep 17 00:00:00 2001
From: joey0320 <joonho0320@gmail.com>
Date: Sun, 16 Apr 2023 10:10:21 -0700
Subject: [PATCH 05/14] update conda-lock file again

---
 ...ements-riscv-tools-linux-64.conda-lock.yml | 84 ++++++++-----------
 1 file changed, 36 insertions(+), 48 deletions(-)

diff --git a/conda-reqs/conda-lock-reqs/conda-requirements-riscv-tools-linux-64.conda-lock.yml b/conda-reqs/conda-lock-reqs/conda-requirements-riscv-tools-linux-64.conda-lock.yml
index 22625f5a13..9e25cb5fa6 100644
--- a/conda-reqs/conda-lock-reqs/conda-requirements-riscv-tools-linux-64.conda-lock.yml
+++ b/conda-reqs/conda-lock-reqs/conda-requirements-riscv-tools-linux-64.conda-lock.yml
@@ -7,9 +7,9 @@
 # Install this environment as "YOURENV" with:
 #     conda-lock install -n YOURENV --file conda-requirements-riscv-tools-linux-64.conda-lock.yml
 # To update a single package to the latest version compatible with the version constraints in the source:
-#     conda-lock lock --lockfile conda-requirements-riscv-tools-linux-64.conda-lock.yml --update PACKAGE
+#     conda-lock lock  --lockfile conda-requirements-riscv-tools-linux-64.conda-lock.yml --update PACKAGE
 # To re-solve the entire environment, e.g. after changing a version constraint in the source file:
-#     conda-lock -f /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/chipyard.yaml -f /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/riscv-tools.yaml -f /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/chipyard.yaml -f /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/riscv-tools.yaml --lockfile conda-requirements-riscv-tools-linux-64.conda-lock.yml
+#     conda-lock -f /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/chipyard.yaml -f /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/riscv-tools.yaml -f /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/chipyard.yaml -f /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/riscv-tools.yaml -f /Users/joonhohwangbo/Documents/UCB-BAR/coding/chipyard/conda-reqs/chipyard.yaml -f /Users/joonhohwangbo/Documents/UCB-BAR/coding/chipyard/conda-reqs/riscv-tools.yaml --lockfile conda-requirements-riscv-tools-linux-64.conda-lock.yml
 metadata:
   channels:
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@@ -21,7 +21,7 @@ metadata:
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     used_env_vars: []
   content_hash:
-    linux-64: 94be5f8cad4026c00d3aef6c3690da6cc358bc79c1f7398049754bd17e861420
+    linux-64: 661e3655416e9e5de13d6b7ef41dd4f18c6e4725072890cdc12d17cdbde356bc
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   sources:
@@ -29,6 +29,8 @@ metadata:
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   - /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/chipyard.yaml
   - /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/riscv-tools.yaml
+  - /Users/joonhohwangbo/Documents/UCB-BAR/coding/chipyard/conda-reqs/chipyard.yaml
+  - /Users/joonhohwangbo/Documents/UCB-BAR/coding/chipyard/conda-reqs/riscv-tools.yaml
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-  url: https://conda.anaconda.org/conda-forge/noarch/importlib-metadata-6.3.0-pyha770c72_0.conda
-  version: 6.3.0
+  url: https://conda.anaconda.org/conda-forge/noarch/importlib-metadata-6.4.1-pyha770c72_0.conda
+  version: 6.4.1
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   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/pip-23.0.1-pyhd8ed1ab_0.conda
-  version: 23.0.1
+  url: https://conda.anaconda.org/conda-forge/noarch/pip-23.1-pyhd8ed1ab_0.conda
+  version: '23.1'
 - category: main
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@@ -4367,16 +4368,16 @@ package:
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+    importlib-metadata: '>=6.4.1,<6.4.2.0a0'
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-    sha256: 0aee044df634fb4d652ecf117b17ab2dd24f8f863334d3010c37e3a96989f0fa
+    md5: 15b0c51cb977c0243b750687eff917b6
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-  url: https://conda.anaconda.org/conda-forge/noarch/importlib_metadata-6.3.0-hd8ed1ab_0.conda
-  version: 6.3.0
+  url: https://conda.anaconda.org/conda-forge/noarch/importlib_metadata-6.4.1-hd8ed1ab_0.conda
+  version: 6.4.1
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   optional: false
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-  url: https://conda.anaconda.org/conda-forge/noarch/botocore-stubs-1.29.113-pyhd8ed1ab_0.conda
-  version: 1.29.113
+  url: https://conda.anaconda.org/conda-forge/noarch/botocore-stubs-1.29.114-pyhd8ed1ab_0.conda
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@@ -5077,14 +5076,14 @@ package:
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-    sha256: 3812de59fe902fbd6ca6096bdfd02ccd8300a460948979071e7e45bc7ebbb66c
+    md5: 3c403408336b409bc12867c0f1416771
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   optional: false
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-  url: https://conda.anaconda.org/conda-forge/noarch/botocore-1.29.113-pyhd8ed1ab_0.conda
-  version: 1.29.113
+  url: https://conda.anaconda.org/conda-forge/noarch/botocore-1.29.114-pyhd8ed1ab_0.conda
+  version: 1.29.114
 - category: main
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@@ -5331,7 +5330,7 @@ package:
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 - category: main
   dependencies:
-    botocore: 1.29.113
+    botocore: 1.29.114
     colorama: '>=0.2.5,<0.4.5'
     docutils: '>=0.10,<0.17'
     python: '>=3.10,<3.11.0a0'
@@ -5340,29 +5339,29 @@ package:
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+    md5: 6018d1a712d1982015b748e26975fa80
+    sha256: cce05269e07a7709bf1c6808fe771997aebeff75431c0e1592fca2d4154c9ddb
   manager: conda
   name: awscli
   optional: false
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-  url: https://conda.anaconda.org/conda-forge/linux-64/awscli-1.27.113-py310hff52083_0.conda
-  version: 1.27.113
+  url: https://conda.anaconda.org/conda-forge/linux-64/awscli-1.27.114-py310hff52083_0.conda
+  version: 1.27.114
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+    botocore: '>=1.29.114,<1.30.0'
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   name: boto3
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/boto3-1.26.113-pyhd8ed1ab_0.conda
-  version: 1.26.113
+  url: https://conda.anaconda.org/conda-forge/noarch/boto3-1.26.114-pyhd8ed1ab_0.conda
+  version: 1.26.114
 - category: main
   dependencies:
     cachecontrol: 0.12.11 pyhd8ed1ab_1
@@ -5655,7 +5654,6 @@ package:
   name: mock
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/e6/88/8a05e7ad0bb823246b2add3d2e97f990c41c71a40762c8db77a4bd78eedf/mock-5.0.1-py3-none-any.whl
   version: 5.0.1
 - dependencies: {}
@@ -5664,7 +5662,6 @@ package:
   manager: pip
   name: pyyaml
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/02/25/6ba9f6bb50a3d4fbe22c1a02554dc670682a07c8701d1716d19ddea2c940/PyYAML-6.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl
   version: '6.0'
 - category: main
@@ -5676,7 +5673,6 @@ package:
   name: asttokens
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/f3/e1/64679d9d0759db5b182222c81ff322c2fe2c31e156a59afd6e9208c960e5/asttokens-2.2.1-py2.py3-none-any.whl
   version: 2.2.1
 - category: main
@@ -5688,7 +5684,6 @@ package:
   name: gdspy
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/1d/e4/97b8add92fbec2a9890ad4777272e9a9e4d7a0ceeac42b7e1febe94f0e86/gdspy-1.4.zip
   version: '1.4'
 - category: main
@@ -5701,7 +5696,6 @@ package:
   name: paramiko-ng
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/9f/53/1ac75eab589149b1e02e38185ecebf09e1b805fc3fdeadbc16d1a2b7d208/paramiko_ng-2.8.10-py2.py3-none-any.whl
   version: 2.8.10
 - category: main
@@ -5713,7 +5707,6 @@ package:
   name: ruamel.yaml
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/9e/cb/938214ac358fbef7058343b3765c79a1b7ed0c366f7f992ce7ff38335652/ruamel.yaml-0.17.21-py3-none-any.whl
   version: 0.17.21
 - category: main
@@ -5726,7 +5719,6 @@ package:
   name: sure
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/dd/ae/eb28ee3b6768e51cb938abcf521cb678217203f33385a2df54d3f23331c5/sure-2.0.1.tar.gz
   version: 2.0.1
 - category: main
@@ -5739,7 +5731,6 @@ package:
   name: fab-classic
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/6b/0f/efc537eebfd2a2c470250c0ac8bd8a05ffc13d95a7fb22021367890d7c46/fab_classic-1.19.2-py2.py3-none-any.whl
   version: 1.19.2
 - category: main
@@ -5755,7 +5746,6 @@ package:
   name: hammer-vlsi
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/53/39/18367e6fb4f20e9ae4fb3097f7b80704ff5cccf62980ea2871ba1d817a74/hammer_vlsi-1.1.0-py3-none-any.whl
   version: 1.1.0
 - category: main
@@ -5768,7 +5758,6 @@ package:
   name: icontract
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/d8/91/9756e7cf0b155e80bf9a62beffdd1dec4afce43cc6ab7f432f2267c62762/icontract-2.6.2-py3-none-any.whl
   version: 2.6.2
 - category: main
@@ -5781,7 +5770,6 @@ package:
   name: pylddwrap
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/c9/12/4afd6542c43cd20271f0e53bf0211decc10079a76a41e53c0288025a7b85/pylddwrap-1.2.2.tar.gz
   version: 1.2.2
 version: 1

From bb6f8be801537aa538bfc8928b823d8b934d93c4 Mon Sep 17 00:00:00 2001
From: joey0320 <joonho0320@gmail.com>
Date: Mon, 17 Apr 2023 10:05:11 -0700
Subject: [PATCH 06/14] bump testchipip

---
 generators/testchipip | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/generators/testchipip b/generators/testchipip
index aa9170afe1..66ff09f611 160000
--- a/generators/testchipip
+++ b/generators/testchipip
@@ -1 +1 @@
-Subproject commit aa9170afe133e74e1c66b0082dc943e272d9e6f0
+Subproject commit 66ff09f611b7b3af7d9413f216fe9890875b727c

From 04f4260901e7a0a740074a4ffebd67a6b31fe5e8 Mon Sep 17 00:00:00 2001
From: joey0320 <joonho0320@gmail.com>
Date: Mon, 17 Apr 2023 10:05:30 -0700
Subject: [PATCH 07/14] rm wrong assertion

---
 scripts/uniqify-module-names.py | 1 -
 1 file changed, 1 deletion(-)

diff --git a/scripts/uniqify-module-names.py b/scripts/uniqify-module-names.py
index 260f8fd3da..d6fd6929e7 100755
--- a/scripts/uniqify-module-names.py
+++ b/scripts/uniqify-module-names.py
@@ -75,7 +75,6 @@ def dfs_update_modules(tree, common_fnames, visited, top_fnames, updated_modules
   # has some child to update, but new_file wasn't generated
   if (new_file is None) and len(childs_to_update) > 0:
     new_file = os.path.join(args.gcpath, cur_file)
-    assert(cur_file not in top_fnames)
 
   for submodule_name in childs_to_update:
     if (submodule_name + ".sv") in common_fnames:

From 9ce0467bd3808b133ce8c1eb0b6548bce468b007 Mon Sep 17 00:00:00 2001
From: joey0320 <joonho0320@gmail.com>
Date: Thu, 20 Apr 2023 14:26:38 -0700
Subject: [PATCH 08/14] fixes

---
 common.mk                       |  5 ++-
 scripts/uniqify-module-names.py | 68 ++++++++++++++++-----------------
 variables.mk                    |  1 +
 vlsi/sim.mk                     |  2 +-
 4 files changed, 38 insertions(+), 38 deletions(-)

diff --git a/common.mk b/common.mk
index ed02a10e2c..e507140a92 100644
--- a/common.mk
+++ b/common.mk
@@ -248,6 +248,7 @@ $(TOP_MODS_FILELIST) $(MODEL_MODS_FILELIST) $(ALL_MODS_FILELIST) $(BB_MODS_FILEL
 		--mod-filelist $(MODEL_MODS_FILELIST) \
 		--gen-collateral-path $(GEN_COLLATERAL_DIR) \
 		--model-hier-json $(MFC_MODEL_HRCHY_JSON) \
+		--out-model-hier-json $(MFC_MODEL_HRCHY_JSON_UNIQUIFIED) \
 		--dut $(TOP)
 	sort -u $(TOP_MODS_FILELIST) $(MODEL_MODS_FILELIST) $(BB_MODS_FILELIST) > $(ALL_MODS_FILELIST)
 
@@ -259,10 +260,10 @@ $(TOP_BB_MODS_FILELIST) $(MODEL_BB_MODS_FILELIST) &: $(BB_MODS_FILELIST) $(MFC_T
 		--out-top-bb-f $(TOP_BB_MODS_FILELIST) \
 		--out-model-bb-f $(MODEL_BB_MODS_FILELIST)
 
-$(TOP_SMEMS_CONF) $(MODEL_SMEMS_CONF) &:  $(MFC_SMEMS_CONF) $(MFC_MODEL_HRCHY_JSON)
+$(TOP_SMEMS_CONF) $(MODEL_SMEMS_CONF) &:  $(MFC_SMEMS_CONF) $(MFC_MODEL_HRCHY_JSON_UNIQUIFIED)
 	$(base_dir)/scripts/split-mems-conf.py \
 		--in-smems-conf $(MFC_SMEMS_CONF) \
-		--in-model-hrchy-json $(MFC_MODEL_HRCHY_JSON) \
+		--in-model-hrchy-json $(MFC_MODEL_HRCHY_JSON_UNIQUIFIED) \
 		--dut-module-name $(TOP) \
 		--model-module-name $(MODEL) \
 		--out-dut-smems-conf $(TOP_SMEMS_CONF) \
diff --git a/scripts/uniqify-module-names.py b/scripts/uniqify-module-names.py
index d6fd6929e7..858c0a19ab 100755
--- a/scripts/uniqify-module-names.py
+++ b/scripts/uniqify-module-names.py
@@ -5,7 +5,7 @@
 import shutil
 import os
 import sh
-
+import datetime
 
 
 parser = argparse.ArgumentParser(description="")
@@ -13,28 +13,35 @@
 parser.add_argument("--mod-filelist", type=str, required=True, help="Abs path to <top>.<model>.model.f")
 parser.add_argument("--gen-collateral-path", dest="gcpath", type=str, required=True, help="Abs path to the gen-collateral directory")
 parser.add_argument("--model-hier-json", type=str, required=True, help="Path to hierarchy JSON emitted by firtool. Must include DUT as a module.")
+parser.add_argument("--out-model-hier-json", type=str, required=True, help="Path to updated hierarchy JSON emitted by this script.")
 parser.add_argument('--dut', type=str, required=True, help='Name of the DUT module.')
 args = parser.parse_args()
 
 
-def get_filelist(filelist):
-  f = open(filelist, "r")
-  lines = f.readlines()
-  f.close()
+MODEL_SFX=str(datetime.date.today().year)
 
-  fnames = []
-  for line in lines:
-    try:
-      fname = line.split("/")[-1].replace("\n", "")
-      fnames.append(fname)
-    except:
-      print(f"Something is wrong about this line {line}")
+def bash(cmd):
+  fail = os.system(cmd)
+  if fail:
+    print(f'[*] failed to execute {cmd}')
+    sys.exit(1)
+  else:
+    print(cmd)
 
+def get_filelist(filelist):
+  fnames = []
+  with open(filelist) as f:
+    lines = f.readlines()
+    for line in lines:
+      try:
+        fname = line.split("/")[-1].strip()
+        fnames.append(fname)
+      except:
+        print(f"Something is wrong about this line '{line}'")
   return fnames
 
 def update_filelist(cur_file, new_file):
-  sh.sed("-i", f"s/\b{cur_file}\b/{new_file}/", os.path.join(args.gcpath, args.mod_filelist))
-
+  bash(f"echo \"{args.gcpath}/{new_file}\" >> {os.path.join(args.gcpath, args.mod_filelist)}")
 
 def generate_copy(c, sfx):
   (cur_name, ext) = os.path.splitext(c)
@@ -45,23 +52,20 @@ def generate_copy(c, sfx):
   new_file = os.path.join(args.gcpath, new_file)
 
   shutil.copy(cur_file, new_file)
-  sh.sed("-i", f"s/\b{cur_name}\b/{new_name}/", new_file)
+  bash(f"sed -i s/\"module {cur_name}\"/\"module {new_name}\"/ {new_file}")
   return new_file
 
-
-
-def dfs_update_modules(tree, common_fnames, visited, top_fnames, updated_modules):
+def dfs_update_modules(tree, common_fnames, visited, top_fnames):
   # List of direct submodules to update
   childs_to_update = list()
   for child in tree['instances']:
     # We don't have to change stuff that are under the dut
     if (child['module_name'] == args.dut) or (child['module_name'] in visited):
       continue
-    if dfs_update_modules(child, common_fnames, visited, top_fnames, updated_modules):
+    if dfs_update_modules(child, common_fnames, visited, top_fnames):
       childs_to_update.append(child['module_name'])
       if (child['module_name'] + ".sv") in common_fnames:
-        child['module_name'] = child['module_name'] + "_Model"
-        updated_modules.append(child['module_name'])
+        child['module_name'] = child['module_name'] + "_" + MODEL_SFX
 
   cur_module = tree['module_name']
   cur_file = cur_module + ".sv"
@@ -69,7 +73,7 @@ def dfs_update_modules(tree, common_fnames, visited, top_fnames, updated_modules
 
   # cur_file is in the common list, generate a new file
   if cur_file in common_fnames:
-    new_file = generate_copy(cur_file, "Model")
+    new_file = generate_copy(cur_file, MODEL_SFX)
     update_filelist(cur_file, os.path.basename(new_file))
 
   # has some child to update, but new_file wasn't generated
@@ -78,29 +82,23 @@ def dfs_update_modules(tree, common_fnames, visited, top_fnames, updated_modules
 
   for submodule_name in childs_to_update:
     if (submodule_name + ".sv") in common_fnames:
-      sh.sed("-i", f"s/\b{submodule_name}\b/{submodule_name}_Model/", new_file)
+      bash(f"sed -i s/\"{submodule_name}\"/\"{submodule_name}_{MODEL_SFX}\"/ {new_file}")
 
   visited.add(cur_module)
   return (new_file is not None)
 
-
 def main():
   top_fnames = set(get_filelist(args.top_filelist))
   mod_fnames = set(get_filelist(args.mod_filelist))
   common_fnames = top_fnames.intersection(mod_fnames)
 
-  imhj = open(args.model_hier_json, "r")
-  imhj_data = json.load(imhj)
-
-  visited = set()
-  updated_modules = list()
-  dfs_update_modules(imhj_data, common_fnames, visited, top_fnames, updated_modules)
-
-  out_file = open(args.model_hier_json, "w")
-  json.dump(imhj_data, out_file, indent=2)
-  out_file.close()
-
+  with open(args.model_hier_json) as imhj:
+    imhj_data = json.load(imhj)
 
+    with open(args.out_model_hier_json, "w+") as out_file:
+      visited = set()
+      dfs_update_modules(imhj_data, common_fnames, visited, top_fnames)
+      json.dump(imhj_data, out_file, indent=2)
 
 if __name__ == "__main__":
   main()
diff --git a/variables.mk b/variables.mk
index eb9620f25b..1f659ac7ca 100644
--- a/variables.mk
+++ b/variables.mk
@@ -162,6 +162,7 @@ SFC_ANNO_FILE ?= $(build_dir)/$(long_name).sfc.anno.json
 # firtool compiler outputs
 MFC_TOP_HRCHY_JSON ?= $(build_dir)/top_module_hierarchy.json
 MFC_MODEL_HRCHY_JSON ?= $(build_dir)/model_module_hierarchy.json
+MFC_MODEL_HRCHY_JSON_UNIQUIFIED ?= $(build_dir)/model_module_hierarchy.uniquified.json
 MFC_SMEMS_CONF ?= $(build_dir)/$(long_name).mems.conf
 # hardcoded firtool outputs
 MFC_FILELIST = $(GEN_COLLATERAL_DIR)/filelist.f
diff --git a/vlsi/sim.mk b/vlsi/sim.mk
index 1f5b530d3b..13a7fcc3e0 100644
--- a/vlsi/sim.mk
+++ b/vlsi/sim.mk
@@ -10,7 +10,7 @@ $(SIM_CONF): $(sim_common_files)
 	echo "  top_module: $(VLSI_TOP)" >> $@
 	echo "  tb_name: ''" >> $@  # don't specify -top
 	echo "  input_files:" >> $@
-	for x in $$(comm -23 <(cat $(MODEL_MODS_FILELIST) $(MODEL_BB_MODS_FILELIST) | sort -u) <(sort $(VLSI_RTL))) $(MODEL_SMEMS_FILE) $(SIM_FILE_REQS); do \
+	for x in $$(cat $(MODEL_MODS_FILELIST) $(MODEL_BB_MODS_FILELIST) | sort -u) $(MODEL_SMEMS_FILE) $(SIM_FILE_REQS); do \
 		echo '    - "'$$x'"' >> $@; \
 	done
 	echo "  input_files_meta: 'append'" >> $@

From 41592fdad1c02b17da59054a8f156b3c13bbfd2e Mon Sep 17 00:00:00 2001
From: joey0320 <joonho0320@gmail.com>
Date: Thu, 20 Apr 2023 16:16:51 -0700
Subject: [PATCH 09/14] address comments

---
 common.mk                       | 3 ++-
 scripts/uniqify-module-names.py | 6 +++---
 2 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/common.mk b/common.mk
index e507140a92..213e37e531 100644
--- a/common.mk
+++ b/common.mk
@@ -249,7 +249,8 @@ $(TOP_MODS_FILELIST) $(MODEL_MODS_FILELIST) $(ALL_MODS_FILELIST) $(BB_MODS_FILEL
 		--gen-collateral-path $(GEN_COLLATERAL_DIR) \
 		--model-hier-json $(MFC_MODEL_HRCHY_JSON) \
 		--out-model-hier-json $(MFC_MODEL_HRCHY_JSON_UNIQUIFIED) \
-		--dut $(TOP)
+		--dut $(TOP) \
+		--model $(MODEL)
 	sort -u $(TOP_MODS_FILELIST) $(MODEL_MODS_FILELIST) $(BB_MODS_FILELIST) > $(ALL_MODS_FILELIST)
 
 $(TOP_BB_MODS_FILELIST) $(MODEL_BB_MODS_FILELIST) &: $(BB_MODS_FILELIST) $(MFC_TOP_HRCHY_JSON) $(FINAL_ANNO_FILE)
diff --git a/scripts/uniqify-module-names.py b/scripts/uniqify-module-names.py
index 858c0a19ab..b573dfc6d9 100755
--- a/scripts/uniqify-module-names.py
+++ b/scripts/uniqify-module-names.py
@@ -4,7 +4,6 @@
 import argparse
 import shutil
 import os
-import sh
 import datetime
 
 
@@ -14,11 +13,12 @@
 parser.add_argument("--gen-collateral-path", dest="gcpath", type=str, required=True, help="Abs path to the gen-collateral directory")
 parser.add_argument("--model-hier-json", type=str, required=True, help="Path to hierarchy JSON emitted by firtool. Must include DUT as a module.")
 parser.add_argument("--out-model-hier-json", type=str, required=True, help="Path to updated hierarchy JSON emitted by this script.")
-parser.add_argument('--dut', type=str, required=True, help='Name of the DUT module.')
+parser.add_argument("--dut", type=str, required=True, help="Name of the DUT module.")
+parser.add_argument("--model", type=str, required=True, help="Name of the Model module.")
 args = parser.parse_args()
 
 
-MODEL_SFX=str(datetime.date.today().year)
+MODEL_SFX=args.model + "_UNIQUIFIED"
 
 def bash(cmd):
   fail = os.system(cmd)

From 10e641344bd77f270bc9046be3d3805393250b6e Mon Sep 17 00:00:00 2001
From: joey0320 <joonho0320@gmail.com>
Date: Thu, 20 Apr 2023 16:17:40 -0700
Subject: [PATCH 10/14] Revert "update conda-lock file again"

This reverts commit 611de45cb19946aa606e9b34a8069759f7eb9f21.
---
 ...ements-riscv-tools-linux-64.conda-lock.yml | 84 +++++++++++--------
 1 file changed, 48 insertions(+), 36 deletions(-)

diff --git a/conda-reqs/conda-lock-reqs/conda-requirements-riscv-tools-linux-64.conda-lock.yml b/conda-reqs/conda-lock-reqs/conda-requirements-riscv-tools-linux-64.conda-lock.yml
index 9e25cb5fa6..22625f5a13 100644
--- a/conda-reqs/conda-lock-reqs/conda-requirements-riscv-tools-linux-64.conda-lock.yml
+++ b/conda-reqs/conda-lock-reqs/conda-requirements-riscv-tools-linux-64.conda-lock.yml
@@ -7,9 +7,9 @@
 # Install this environment as "YOURENV" with:
 #     conda-lock install -n YOURENV --file conda-requirements-riscv-tools-linux-64.conda-lock.yml
 # To update a single package to the latest version compatible with the version constraints in the source:
-#     conda-lock lock  --lockfile conda-requirements-riscv-tools-linux-64.conda-lock.yml --update PACKAGE
+#     conda-lock lock --lockfile conda-requirements-riscv-tools-linux-64.conda-lock.yml --update PACKAGE
 # To re-solve the entire environment, e.g. after changing a version constraint in the source file:
-#     conda-lock -f /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/chipyard.yaml -f /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/riscv-tools.yaml -f /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/chipyard.yaml -f /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/riscv-tools.yaml -f /Users/joonhohwangbo/Documents/UCB-BAR/coding/chipyard/conda-reqs/chipyard.yaml -f /Users/joonhohwangbo/Documents/UCB-BAR/coding/chipyard/conda-reqs/riscv-tools.yaml --lockfile conda-requirements-riscv-tools-linux-64.conda-lock.yml
+#     conda-lock -f /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/chipyard.yaml -f /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/riscv-tools.yaml -f /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/chipyard.yaml -f /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/riscv-tools.yaml --lockfile conda-requirements-riscv-tools-linux-64.conda-lock.yml
 metadata:
   channels:
   - url: ucb-bar
@@ -21,7 +21,7 @@ metadata:
   - url: nodefaults
     used_env_vars: []
   content_hash:
-    linux-64: 661e3655416e9e5de13d6b7ef41dd4f18c6e4725072890cdc12d17cdbde356bc
+    linux-64: 94be5f8cad4026c00d3aef6c3690da6cc358bc79c1f7398049754bd17e861420
   platforms:
   - linux-64
   sources:
@@ -29,8 +29,6 @@ metadata:
   - /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/riscv-tools.yaml
   - /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/chipyard.yaml
   - /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/riscv-tools.yaml
-  - /Users/joonhohwangbo/Documents/UCB-BAR/coding/chipyard/conda-reqs/chipyard.yaml
-  - /Users/joonhohwangbo/Documents/UCB-BAR/coding/chipyard/conda-reqs/riscv-tools.yaml
 package:
 - category: main
   dependencies: {}
@@ -424,6 +422,7 @@ package:
     libstdcxx-ng: '>=12'
   hash:
     md5: 6bfb79319763a11c7423c9d0e0ee00b7
+    sha256: null
   manager: conda
   name: dromajo
   optional: false
@@ -3818,14 +3817,14 @@ package:
     python: '>=3.8'
     zipp: '>=0.5'
   hash:
-    md5: b3c9bdaa68a0ba7549f67e7f5c766c83
-    sha256: f51cfdafac71f7a3bb6e12cc68d7218de29391dd0798768b7775dea444bbdcae
+    md5: c63decd397ca639c4b17f6ea5d26bd4d
+    sha256: 26a56c66c95389e9e2bd95e88f023fd94d4a60e4817bcbe4103f6220d0c17d86
   manager: conda
   name: importlib-metadata
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/importlib-metadata-6.4.1-pyha770c72_0.conda
-  version: 6.4.1
+  url: https://conda.anaconda.org/conda-forge/noarch/importlib-metadata-6.3.0-pyha770c72_0.conda
+  version: 6.3.0
 - category: main
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@@ -4006,14 +4005,14 @@ package:
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     wheel: ''
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-    sha256: 781992f04a8c765b1ad29b54fc9f76c12b0864f9defd2869eeb5edff15b51546
+    md5: 8025ca83b8ba5430b640b83917c2a6f7
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   manager: conda
   name: pip
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/pip-23.1-pyhd8ed1ab_0.conda
-  version: '23.1'
+  url: https://conda.anaconda.org/conda-forge/noarch/pip-23.0.1-pyhd8ed1ab_0.conda
+  version: 23.0.1
 - category: main
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@@ -4368,16 +4367,16 @@ package:
   version: 6.0.0
 - category: main
   dependencies:
-    importlib-metadata: '>=6.4.1,<6.4.2.0a0'
+    importlib-metadata: '>=6.3.0,<6.3.1.0a0'
   hash:
-    md5: 15b0c51cb977c0243b750687eff917b6
-    sha256: 369e704eec7eca35dc10344113c778248b71c26fd17bec51412ca184808966ef
+    md5: 1dee0ac2ed01030b56bdd33eabebc42f
+    sha256: 0aee044df634fb4d652ecf117b17ab2dd24f8f863334d3010c37e3a96989f0fa
   manager: conda
   name: importlib_metadata
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/importlib_metadata-6.4.1-hd8ed1ab_0.conda
-  version: 6.4.1
+  url: https://conda.anaconda.org/conda-forge/noarch/importlib_metadata-6.3.0-hd8ed1ab_0.conda
+  version: 6.3.0
 - category: main
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@@ -4403,6 +4402,7 @@ package:
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   hash:
     md5: 5b3ed39ee3809d63d347b649de0a45f8
+    sha256: null
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@@ -4621,14 +4621,14 @@ package:
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     typing_extensions: ''
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-    sha256: cd2c92d0ab21305cd1afc9c503495564cf56397816af0a12c84c35fbfc849fba
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   manager: conda
   name: botocore-stubs
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/botocore-stubs-1.29.114-pyhd8ed1ab_0.conda
-  version: 1.29.114
+  url: https://conda.anaconda.org/conda-forge/noarch/botocore-stubs-1.29.113-pyhd8ed1ab_0.conda
+  version: 1.29.113
 - category: main
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@@ -4723,6 +4723,7 @@ package:
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   hash:
     md5: 899c511688e6c41cb51c2921a8d25e63
+    sha256: null
   manager: conda
   name: libdwarf-dev
   optional: false
@@ -5076,14 +5077,14 @@ package:
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-    sha256: fd55f823f5649529d84162f4c1543b9fe6308b8d781078aff59a79b6d52e4e50
+    md5: 28e3074f0184e908a78dd99ad7206916
+    sha256: 3812de59fe902fbd6ca6096bdfd02ccd8300a460948979071e7e45bc7ebbb66c
   manager: conda
   name: botocore
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/botocore-1.29.114-pyhd8ed1ab_0.conda
-  version: 1.29.114
+  url: https://conda.anaconda.org/conda-forge/noarch/botocore-1.29.113-pyhd8ed1ab_0.conda
+  version: 1.29.113
 - category: main
   dependencies:
     cairo: '>=1.16.0,<2.0a0'
@@ -5330,7 +5331,7 @@ package:
   version: 5.1.1
 - category: main
   dependencies:
-    botocore: 1.29.114
+    botocore: 1.29.113
     colorama: '>=0.2.5,<0.4.5'
     docutils: '>=0.10,<0.17'
     python: '>=3.10,<3.11.0a0'
@@ -5339,29 +5340,29 @@ package:
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     s3transfer: '>=0.6.0,<0.7.0'
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-    sha256: cce05269e07a7709bf1c6808fe771997aebeff75431c0e1592fca2d4154c9ddb
+    md5: 3e9e90cd2b4355932b94898eda78783d
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   manager: conda
   name: awscli
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/linux-64/awscli-1.27.114-py310hff52083_0.conda
-  version: 1.27.114
+  url: https://conda.anaconda.org/conda-forge/linux-64/awscli-1.27.113-py310hff52083_0.conda
+  version: 1.27.113
 - category: main
   dependencies:
-    botocore: '>=1.29.114,<1.30.0'
+    botocore: '>=1.29.113,<1.30.0'
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-    sha256: 7e268ec2c2783d23a32f02170fec03edce32b4ba81a36b410399537d38a343b1
+    md5: df6d2b9af30a1cca57b65514af77aeb9
+    sha256: 166352179c0be643a1b103a3e504f8704cbc528bf7d9723b28429cbf3ee36bfe
   manager: conda
   name: boto3
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/boto3-1.26.114-pyhd8ed1ab_0.conda
-  version: 1.26.114
+  url: https://conda.anaconda.org/conda-forge/noarch/boto3-1.26.113-pyhd8ed1ab_0.conda
+  version: 1.26.113
 - category: main
   dependencies:
     cachecontrol: 0.12.11 pyhd8ed1ab_1
@@ -5654,6 +5655,7 @@ package:
   name: mock
   optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/e6/88/8a05e7ad0bb823246b2add3d2e97f990c41c71a40762c8db77a4bd78eedf/mock-5.0.1-py3-none-any.whl
   version: 5.0.1
 - dependencies: {}
@@ -5662,6 +5664,7 @@ package:
   manager: pip
   name: pyyaml
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/02/25/6ba9f6bb50a3d4fbe22c1a02554dc670682a07c8701d1716d19ddea2c940/PyYAML-6.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl
   version: '6.0'
 - category: main
@@ -5673,6 +5676,7 @@ package:
   name: asttokens
   optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/f3/e1/64679d9d0759db5b182222c81ff322c2fe2c31e156a59afd6e9208c960e5/asttokens-2.2.1-py2.py3-none-any.whl
   version: 2.2.1
 - category: main
@@ -5684,6 +5688,7 @@ package:
   name: gdspy
   optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/1d/e4/97b8add92fbec2a9890ad4777272e9a9e4d7a0ceeac42b7e1febe94f0e86/gdspy-1.4.zip
   version: '1.4'
 - category: main
@@ -5696,6 +5701,7 @@ package:
   name: paramiko-ng
   optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/9f/53/1ac75eab589149b1e02e38185ecebf09e1b805fc3fdeadbc16d1a2b7d208/paramiko_ng-2.8.10-py2.py3-none-any.whl
   version: 2.8.10
 - category: main
@@ -5707,6 +5713,7 @@ package:
   name: ruamel.yaml
   optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/9e/cb/938214ac358fbef7058343b3765c79a1b7ed0c366f7f992ce7ff38335652/ruamel.yaml-0.17.21-py3-none-any.whl
   version: 0.17.21
 - category: main
@@ -5719,6 +5726,7 @@ package:
   name: sure
   optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/dd/ae/eb28ee3b6768e51cb938abcf521cb678217203f33385a2df54d3f23331c5/sure-2.0.1.tar.gz
   version: 2.0.1
 - category: main
@@ -5731,6 +5739,7 @@ package:
   name: fab-classic
   optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/6b/0f/efc537eebfd2a2c470250c0ac8bd8a05ffc13d95a7fb22021367890d7c46/fab_classic-1.19.2-py2.py3-none-any.whl
   version: 1.19.2
 - category: main
@@ -5746,6 +5755,7 @@ package:
   name: hammer-vlsi
   optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/53/39/18367e6fb4f20e9ae4fb3097f7b80704ff5cccf62980ea2871ba1d817a74/hammer_vlsi-1.1.0-py3-none-any.whl
   version: 1.1.0
 - category: main
@@ -5758,6 +5768,7 @@ package:
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   optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/d8/91/9756e7cf0b155e80bf9a62beffdd1dec4afce43cc6ab7f432f2267c62762/icontract-2.6.2-py3-none-any.whl
   version: 2.6.2
 - category: main
@@ -5770,6 +5781,7 @@ package:
   name: pylddwrap
   optional: false
   platform: linux-64
+  source: null
   url: https://files.pythonhosted.org/packages/c9/12/4afd6542c43cd20271f0e53bf0211decc10079a76a41e53c0288025a7b85/pylddwrap-1.2.2.tar.gz
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 version: 1

From 776419e6aebd95a8afe70812dff7c96a0987dccb Mon Sep 17 00:00:00 2001
From: joey0320 <joonho0320@gmail.com>
Date: Thu, 20 Apr 2023 16:17:52 -0700
Subject: [PATCH 11/14] Revert "add sh to conda env"

This reverts commit 632a8957ffd7666e8fdea566a1ff30b7d913b416.
---
 conda-reqs/chipyard.yaml                      |    1 -
 ...ements-riscv-tools-linux-64.conda-lock.yml | 1135 +++++++----------
 2 files changed, 439 insertions(+), 697 deletions(-)

diff --git a/conda-reqs/chipyard.yaml b/conda-reqs/chipyard.yaml
index 7b928cae64..59c5de5147 100644
--- a/conda-reqs/chipyard.yaml
+++ b/conda-reqs/chipyard.yaml
@@ -39,7 +39,6 @@ dependencies:
     - coreutils
     - jq
     - pip
-    - sh
 
     # firemarshal deps
     - qemu # from ucb-bar channel - https://github.com/ucb-bar/qemu-feedstock
diff --git a/conda-reqs/conda-lock-reqs/conda-requirements-riscv-tools-linux-64.conda-lock.yml b/conda-reqs/conda-lock-reqs/conda-requirements-riscv-tools-linux-64.conda-lock.yml
index 22625f5a13..ca4c96d264 100644
--- a/conda-reqs/conda-lock-reqs/conda-requirements-riscv-tools-linux-64.conda-lock.yml
+++ b/conda-reqs/conda-lock-reqs/conda-requirements-riscv-tools-linux-64.conda-lock.yml
@@ -7,9 +7,9 @@
 # Install this environment as "YOURENV" with:
 #     conda-lock install -n YOURENV --file conda-requirements-riscv-tools-linux-64.conda-lock.yml
 # To update a single package to the latest version compatible with the version constraints in the source:
-#     conda-lock lock --lockfile conda-requirements-riscv-tools-linux-64.conda-lock.yml --update PACKAGE
+#     conda-lock lock  --lockfile conda-requirements-riscv-tools-linux-64.conda-lock.yml --update PACKAGE
 # To re-solve the entire environment, e.g. after changing a version constraint in the source file:
-#     conda-lock -f /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/chipyard.yaml -f /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/riscv-tools.yaml -f /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/chipyard.yaml -f /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/riscv-tools.yaml --lockfile conda-requirements-riscv-tools-linux-64.conda-lock.yml
+#     conda-lock -f /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/chipyard.yaml -f /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/riscv-tools.yaml --lockfile conda-requirements-riscv-tools-linux-64.conda-lock.yml
 metadata:
   channels:
   - url: ucb-bar
@@ -21,14 +21,12 @@ metadata:
   - url: nodefaults
     used_env_vars: []
   content_hash:
-    linux-64: 94be5f8cad4026c00d3aef6c3690da6cc358bc79c1f7398049754bd17e861420
+    linux-64: 1a7b0ae002798a28682d700644302284790c06503a7d3d04caa019aa74da7123
   platforms:
   - linux-64
   sources:
   - /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/chipyard.yaml
   - /bwrcq/C/harrisonliew/chipyard-new-hammer/conda-reqs/riscv-tools.yaml
-  - /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/chipyard.yaml
-  - /scratch/joonho.whangbo/coding/circt-fix-cy/conda-reqs/riscv-tools.yaml
 package:
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@@ -187,14 +185,14 @@ package:
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+    md5: 7697d37e29669a14b053e82fad22a16b
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   manager: conda
   name: open_pdks.sky130a
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/litex-hub/noarch/open_pdks.sky130a-1.0.406_0_g0c37b7c-20230412_103222.tar.bz2
-  version: 1.0.406_0_g0c37b7c
+  url: https://conda.anaconda.org/litex-hub/noarch/open_pdks.sky130a-1.0.402_1_g12df12e-20230225_164303.tar.bz2
+  version: 1.0.402_1_g12df12e
 - category: main
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   manager: conda
   name: tzdata
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/tzdata-2023c-h71feb2d_0.conda
-  version: 2023c
+  url: https://conda.anaconda.org/conda-forge/noarch/tzdata-2022g-h191b570_0.conda
+  version: 2022g
 - category: main
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     font-ttf-dejavu-sans-mono: ''
@@ -422,13 +420,25 @@ package:
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-    sha256: null
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   optional: false
   platform: linux-64
   url: https://conda.anaconda.org/ucb-bar/linux-64/dromajo-1.0.0-0_h1234567_g6a6e34e.tar.bz2
   version: 1.0.0
+- category: main
+  dependencies:
+    libgcc-ng: '>=12'
+    libstdcxx-ng: '>=12'
+  hash:
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+    sha256: b44db0b92ae926b3fbbcd57c179fceb64fa11a9f9d09082e03be58b74dcad832
+  manager: conda
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+  optional: false
+  platform: linux-64
+  url: https://conda.anaconda.org/conda-forge/linux-64/expat-2.5.0-h27087fc_0.tar.bz2
+  version: 2.5.0
 - category: main
   dependencies:
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@@ -518,17 +528,17 @@ package:
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 - category: main
   dependencies:
-    libgcc-ng: '>=12'
-    libstdcxx-ng: '>=12'
+    libgcc-ng: '>=10.3.0'
+    libstdcxx-ng: '>=10.3.0'
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-    sha256: e44cc00eec068e7f7a6dd117ba17bf5d57658729b7b841945546f82505138292
+    md5: 87473a15119779e021c314249d4b4aed
+    sha256: 1d7950f3be4637ab915d886304e57731d39a41ab705ffc95c4681655c459374a
   manager: conda
   name: icu
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/linux-64/icu-72.1-hcb278e6_0.conda
-  version: '72.1'
+  url: https://conda.anaconda.org/conda-forge/linux-64/icu-70.1-h27087fc_0.tar.bz2
+  version: '70.1'
 - category: main
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@@ -582,14 +592,14 @@ package:
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-    sha256: 949d84ceea543802c1e085b2aa58f1d6cb5dd8cec5a9abaaf4e8ac65d6094b3a
+    md5: 5cc781fd91968b11a8a7fdbee0982676
+    sha256: f9983a8ea03531f2c14bce76c870ca325c0fddf0c4e872bff1f78bc52624179c
   manager: conda
   name: libdeflate
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.18-h0b41bf4_0.conda
-  version: '1.18'
+  url: https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.17-h0b41bf4_0.conda
+  version: '1.17'
 - category: main
   dependencies:
     libgcc-ng: '>=7.5.0'
@@ -602,18 +612,6 @@ package:
   platform: linux-64
   url: https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-h516909a_1.tar.bz2
   version: '4.33'
-- category: main
-  dependencies:
-    libgcc-ng: '>=12'
-  hash:
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-    sha256: 74c98a563777ae2ad71f1f74d458a8ab043cee4a513467c159ccf159d0e461f3
-  manager: conda
-  name: libexpat
-  optional: false
-  platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.5.0-hcb278e6_1.conda
-  version: 2.5.0
 - category: main
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@@ -650,18 +648,6 @@ package:
   platform: linux-64
   url: https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-h166bdaf_0.tar.bz2
   version: '1.17'
-- category: main
-  dependencies:
-    libgcc-ng: '>=12'
-  hash:
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-    sha256: b19de7bda34eac4fa931be11fa8d7640cdf1441dfd51c91786586a4a4c64c92f
-  manager: conda
-  name: libjpeg-turbo
-  optional: false
-  platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-2.1.5.1-h0b41bf4_0.conda
-  version: 2.1.5.1
 - category: main
   dependencies:
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@@ -750,16 +736,16 @@ package:
   version: 0.9.10
 - category: main
   dependencies:
-    libgcc-ng: '>=12'
+    libgcc-ng: '>=9.3.0'
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 - category: main
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+  url: https://conda.anaconda.org/conda-forge/linux-64/gdk-pixbuf-2.42.10-h05c8ddd_0.conda
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-    boto3: '>=1.19.5,<2'
-    jsonschema: '>=3.2,<5'
-    pydantic: ~=1.10.2
-    python: '>=3.7'
-    typing_extensions: ~=4.4.0
+    boto3: ~=1.5
+    jsonschema: ~=3.2
+    python: '>=3.6'
+    six: ~=1.15
   hash:
-    md5: a2ff8ae9166304e1d92de1d0a27c685f
-    sha256: b31c644b69c40dd6054dd3b7fb37a4842787e424363cdbef58f0277ac7cf8f53
+    md5: 6a8ad721f4edea85a40070c78f379dd4
+    sha256: d9b2ff5fdf1e8de7cf80f2a14a7cb76c65c0bae18a2fe51700e6ed3c71fdb5b5
   manager: conda
   name: aws-sam-translator
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/aws-sam-translator-1.64.0-pyhd8ed1ab_0.conda
-  version: 1.64.0
+  url: https://conda.anaconda.org/conda-forge/noarch/aws-sam-translator-1.55.0-pyhd8ed1ab_0.conda
+  version: 1.55.0
 - category: main
   dependencies:
     azure-core: '>=1.11.0,<2.0.0'
@@ -5489,14 +5261,14 @@ package:
     python: ''
     typing_extensions: ''
   hash:
-    md5: 7c21abb869df9bd06d48ef16a2b0ba6f
-    sha256: 3c8a8e4bbbce0568d7c7c80afc32267ccd72abdc721fe58fc091d06cbfdfae32
+    md5: 009fa15810ae5d376e1bd29ab93c1081
+    sha256: 380426f97ae074ad86a1b52bb106e1f10e868bc8b7c575bea6ea5ac7725bc84d
   manager: conda
   name: boto3-stubs
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/boto3-stubs-1.26.114-pyhd8ed1ab_0.conda
-  version: 1.26.114
+  url: https://conda.anaconda.org/conda-forge/noarch/boto3-stubs-1.26.95-pyhd8ed1ab_0.conda
+  version: 1.26.95
 - category: main
   dependencies:
     cachecontrol-with-filecache: '>=0.12.9'
@@ -5537,42 +5309,28 @@ package:
     python: '>=3.6'
     typing-extensions: ''
   hash:
-    md5: ce2ab763906935235cb7c8b3e9277fed
-    sha256: c861637ebae5ba4fd193c2ea0dd0216cb5e1fff9924e118d45775a06930048ee
+    md5: 0c79de238c80f668f5a4e85a2ca1dced
+    sha256: 348b0bdb9d9fcfdfc24c43ea93a29e2c5aba7f8d0e5570517e965c758c380419
   manager: conda
   name: mypy-boto3-s3
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/mypy-boto3-s3-1.26.104-pyhd8ed1ab_0.conda
-  version: 1.26.104
+  url: https://conda.anaconda.org/conda-forge/noarch/mypy-boto3-s3-1.26.62-pyhd8ed1ab_0.conda
+  version: 1.26.62
 - category: main
   dependencies:
     boto3: ''
     python: '>=3.6'
     typing-extensions: ''
   hash:
-    md5: 93e899cf501d962cfd1b251a45416825
-    sha256: ef57856f4313eac453b53a119cedf121bd16fc98c64beaee8e3309959673daea
+    md5: a0ead2e95ffa5942c419234c15463344
+    sha256: 7e7bb339939a50d9e682c01938062d2d4e1157a7b034d7f91e44e11d98c0d05d
   manager: conda
   name: mypy_boto3_ec2
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/mypy_boto3_ec2-1.26.106-pyhd8ed1ab_0.conda
-  version: 1.26.106
-- category: main
-  dependencies:
-    boto3: ''
-    fsspec: '>=0.6.0'
-    python: '>=3.5'
-  hash:
-    md5: ead328eb12f01d88706126ba061e7a69
-    sha256: 7a4cb574ff7edf773e5e4c396733dcb08ffcfd6e4f8b27e5b84b35fd4666ef5b
-  manager: conda
-  name: s3fs
-  optional: false
-  platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/s3fs-0.4.2-py_0.tar.bz2
-  version: 0.4.2
+  url: https://conda.anaconda.org/conda-forge/noarch/mypy_boto3_ec2-1.26.91-pyhd8ed1ab_0.conda
+  version: 1.26.91
 - category: main
   dependencies:
     docutils: <0.19
@@ -5590,26 +5348,24 @@ package:
   version: 1.2.0
 - category: main
   dependencies:
-    aws-sam-translator: '>=1.62.0'
+    aws-sam-translator: '>=1.55.0'
     jschema-to-python: ~=1.2.3
     jsonpatch: ''
     jsonschema: '>=3.0,<5'
     junit-xml: ~=1.9
-    networkx: ~=2.4,<4
+    networkx: ~=2.4
     python: '>=3.7'
     pyyaml: '>5.4'
-    regex: ''
     sarif-om: ~=1.0.4
-    sympy: '>=1.0.0'
   hash:
-    md5: 8a4bfed09432193675e0b0811f238162
-    sha256: 7baaba7cca293448921fcc8afb7bb61a745dc830f4d616f4221fc061824d8102
+    md5: 97bf916949bb4eb9f69c77d365a4da72
+    sha256: 7d8c32e83b839abbb4c2a6b476b2a4a60f03394ac6156740f81abba64dbcf756
   manager: conda
   name: cfn-lint
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/cfn-lint-0.77.0-pyhd8ed1ab_0.conda
-  version: 0.77.0
+  url: https://conda.anaconda.org/conda-forge/noarch/cfn-lint-0.75.1-pyhd8ed1ab_0.conda
+  version: 0.75.1
 - category: main
   dependencies:
     aws-xray-sdk: '!=0.96,>=0.93'
@@ -5639,14 +5395,14 @@ package:
     werkzeug: <2.2.0,>=0.5
     xmltodict: ''
   hash:
-    md5: 32f26257ac824d26493bf387694eb35d
-    sha256: 86f6ae6a96d28ca6e1e72790e1bf6d33b2ec1ba9274619283d29a593a34494fe
+    md5: 702e5d281f691be1bec2f23d1f24fee8
+    sha256: 5f7094094ef361b135068b12facdf34c18d2b285c4bd87a935ab1c7e633990ee
   manager: conda
   name: moto
   optional: false
   platform: linux-64
-  url: https://conda.anaconda.org/conda-forge/noarch/moto-4.1.7-pyhd8ed1ab_0.conda
-  version: 4.1.7
+  url: https://conda.anaconda.org/conda-forge/noarch/moto-4.1.5-pyhd8ed1ab_0.conda
+  version: 4.1.5
 - category: main
   dependencies: {}
   hash:
@@ -5655,7 +5411,6 @@ package:
   name: mock
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/e6/88/8a05e7ad0bb823246b2add3d2e97f990c41c71a40762c8db77a4bd78eedf/mock-5.0.1-py3-none-any.whl
   version: 5.0.1
 - dependencies: {}
@@ -5664,7 +5419,6 @@ package:
   manager: pip
   name: pyyaml
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/02/25/6ba9f6bb50a3d4fbe22c1a02554dc670682a07c8701d1716d19ddea2c940/PyYAML-6.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl
   version: '6.0'
 - category: main
@@ -5676,7 +5430,6 @@ package:
   name: asttokens
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/f3/e1/64679d9d0759db5b182222c81ff322c2fe2c31e156a59afd6e9208c960e5/asttokens-2.2.1-py2.py3-none-any.whl
   version: 2.2.1
 - category: main
@@ -5688,7 +5441,6 @@ package:
   name: gdspy
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/1d/e4/97b8add92fbec2a9890ad4777272e9a9e4d7a0ceeac42b7e1febe94f0e86/gdspy-1.4.zip
   version: '1.4'
 - category: main
@@ -5701,19 +5453,15 @@ package:
   name: paramiko-ng
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/9f/53/1ac75eab589149b1e02e38185ecebf09e1b805fc3fdeadbc16d1a2b7d208/paramiko_ng-2.8.10-py2.py3-none-any.whl
   version: 2.8.10
-- category: main
-  dependencies:
+- dependencies:
     ruamel.yaml.clib: '>=0.2.6'
   hash:
     sha256: 742b35d3d665023981bd6d16b3d24248ce5df75fdb4e2924e93a05c1f8b61ca7
   manager: pip
   name: ruamel.yaml
-  optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/9e/cb/938214ac358fbef7058343b3765c79a1b7ed0c366f7f992ce7ff38335652/ruamel.yaml-0.17.21-py3-none-any.whl
   version: 0.17.21
 - category: main
@@ -5726,7 +5474,6 @@ package:
   name: sure
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/dd/ae/eb28ee3b6768e51cb938abcf521cb678217203f33385a2df54d3f23331c5/sure-2.0.1.tar.gz
   version: 2.0.1
 - category: main
@@ -5739,7 +5486,6 @@ package:
   name: fab-classic
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/6b/0f/efc537eebfd2a2c470250c0ac8bd8a05ffc13d95a7fb22021367890d7c46/fab_classic-1.19.2-py2.py3-none-any.whl
   version: 1.19.2
 - category: main
@@ -5755,7 +5501,6 @@ package:
   name: hammer-vlsi
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/53/39/18367e6fb4f20e9ae4fb3097f7b80704ff5cccf62980ea2871ba1d817a74/hammer_vlsi-1.1.0-py3-none-any.whl
   version: 1.1.0
 - category: main
@@ -5768,7 +5513,6 @@ package:
   name: icontract
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/d8/91/9756e7cf0b155e80bf9a62beffdd1dec4afce43cc6ab7f432f2267c62762/icontract-2.6.2-py3-none-any.whl
   version: 2.6.2
 - category: main
@@ -5781,7 +5525,6 @@ package:
   name: pylddwrap
   optional: false
   platform: linux-64
-  source: null
   url: https://files.pythonhosted.org/packages/c9/12/4afd6542c43cd20271f0e53bf0211decc10079a76a41e53c0288025a7b85/pylddwrap-1.2.2.tar.gz
   version: 1.2.2
 version: 1

From dfe34873f755c5e236933b46e268934eb4e96dbf Mon Sep 17 00:00:00 2001
From: joey0320 <joonho0320@gmail.com>
Date: Thu, 20 Apr 2023 16:39:05 -0700
Subject: [PATCH 12/14] Revert "bump testchipip"

This reverts commit bb6f8be801537aa538bfc8928b823d8b934d93c4.
---
 generators/testchipip | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/generators/testchipip b/generators/testchipip
index 66ff09f611..aa9170afe1 160000
--- a/generators/testchipip
+++ b/generators/testchipip
@@ -1 +1 @@
-Subproject commit 66ff09f611b7b3af7d9413f216fe9890875b727c
+Subproject commit aa9170afe133e74e1c66b0082dc943e272d9e6f0

From 57d7e55457d8a223fcf0941ab5948787c896dcb4 Mon Sep 17 00:00:00 2001
From: joey0320 <joonho0320@gmail.com>
Date: Thu, 20 Apr 2023 18:20:26 -0700
Subject: [PATCH 13/14] oops

---
 common.mk | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/common.mk b/common.mk
index 213e37e531..5c1f2461d1 100644
--- a/common.mk
+++ b/common.mk
@@ -231,7 +231,7 @@ $(SFC_MFC_TARGETS) &: $(FIRRTL_FILE) $(FINAL_ANNO_FILE) $(SFC_LEVEL) $(EXTRA_FIR
 	$(SED) -i 's/.*/& /' $(MFC_SMEMS_CONF) # need trailing space for SFC macrocompiler
 # DOC include end: FirrtlCompiler
 
-$(TOP_MODS_FILELIST) $(MODEL_MODS_FILELIST) $(ALL_MODS_FILELIST) $(BB_MODS_FILELIST) &: $(MFC_MODEL_HRCHY_JSON) $(MFC_FILELIST) $(MFC_BB_MODS_FILELIST)
+$(TOP_MODS_FILELIST) $(MODEL_MODS_FILELIST) $(ALL_MODS_FILELIST) $(BB_MODS_FILELIST) $(MFC_MODEL_HRCHY_JSON_UNIQUIFIED) &: $(MFC_MODEL_HRCHY_JSON) $(MFC_FILELIST) $(MFC_BB_MODS_FILELIST)
 	$(base_dir)/scripts/split-module-files.py \
 		--model-hier-json $(MFC_MODEL_HRCHY_JSON) \
 		--dut $(TOP) \

From 4d988a24e9500010eb8c8391831bc197d51660cf Mon Sep 17 00:00:00 2001
From: joey0320 <joonho0320@gmail.com>
Date: Fri, 21 Apr 2023 09:41:56 -0700
Subject: [PATCH 14/14] fix

---
 scripts/uniqify-module-names.py | 8 ++------
 1 file changed, 2 insertions(+), 6 deletions(-)

diff --git a/scripts/uniqify-module-names.py b/scripts/uniqify-module-names.py
index b573dfc6d9..a6255a8c90 100755
--- a/scripts/uniqify-module-names.py
+++ b/scripts/uniqify-module-names.py
@@ -71,15 +71,11 @@ def dfs_update_modules(tree, common_fnames, visited, top_fnames):
   cur_file = cur_module + ".sv"
   new_file = None
 
-  # cur_file is in the common list, generate a new file
-  if cur_file in common_fnames:
+  # cur_file is in the common list, or is a ancestor of of them, generate a new file
+  if (cur_file in common_fnames) or len(childs_to_update) > 0:
     new_file = generate_copy(cur_file, MODEL_SFX)
     update_filelist(cur_file, os.path.basename(new_file))
 
-  # has some child to update, but new_file wasn't generated
-  if (new_file is None) and len(childs_to_update) > 0:
-    new_file = os.path.join(args.gcpath, cur_file)
-
   for submodule_name in childs_to_update:
     if (submodule_name + ".sv") in common_fnames:
       bash(f"sed -i s/\"{submodule_name}\"/\"{submodule_name}_{MODEL_SFX}\"/ {new_file}")