A single cell transcriptomics pipeline for QC, integration and making the data presentable
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Jan 8, 2025 - Nextflow
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quality-control
Here are 13 public repositories matching this topic...
Pipelines for the production of Treeval data
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Jan 8, 2025 - Nextflow
A simple pipeline for bacterial assembly and quality control
bioinformatics quality-control annotation nextflow assembly pipelines metagenomics bacteria contamination-detection
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Dec 23, 2024 - Nextflow
A pipeline for assembling and annotation of vectors
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Aug 19, 2021 - Nextflow
Compare the quality of multiple genomes, along with their annotations.
bioinformatics quality-control pipeline genomics nextflow phylogenetic-trees genome-assembly-evaluation nf-core
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Dec 20, 2024 - Nextflow
quality-control nextflow genome-annotation irma influenza genome-assembly nf-core nextflow-pipeline sars-cov-2 rsv ncird-id cdc-influenza-division
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Jan 8, 2025 - Nextflow
Remove host reads from a microbial pathogen sequence dataset by aligning against a reference genome. Verify that the reads were removed using Kraken2/Bracken
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Jul 23, 2024 - Nextflow
Proof of concept of a SRA to trimmed FASTQ (including quality control) pipeline with Nextflow
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Jan 17, 2022 - Nextflow
Collect basic sequence QC metrics from nanopore reads
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Sep 7, 2023 - Nextflow
A Nextflow wrapper for HistoQC
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Apr 4, 2024 - Nextflow
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Jul 1, 2020 - Nextflow
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