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phylogenomics-pipeline

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Public-Health-Bioinformatics / irida-plugin-snippy-phylogenomics

Call core SNPs agains a reference genome for a set of bacterial isolates, and build a phylogenetic tree based on the core-genome SNP information.

bioinformatics-pipeline microbial-genomics phylogenomics-pipeline irida-pipeline

Updated Nov 20, 2020
Java

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