ClairS - a deep-learning method for long-read somatic small variant calling
Generic human DNA variant annotation pipeline
Snakemake-based computational workflow for neoantigen prediction from diverse sources
xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from next-generation DNA sequencing data.
🐳 Dockerized WES pipeline for variants identification in mathced tumor-normal samples
Barton and Zeng (2019) - Pipeline for great tit indel analysis.
A Platypus-based variant calling pipeline for cancer data
Barton and Zeng (2018) - Pipeline and scripts for popgen analysis of whole-genome drosophila data.
A Platypus-based workflow for indel calling
VariantCaller is a wrapper for the 2022 gatk & bcftools best practices + phasing with WhatsHap.
NGS data analysis scripts for HBV elimination research group
gappy2 is the successor of gappy v1
An adaptable method for analyzing SNVs, INDELs, and CNVs from Whole Exome Sequencing (WES) data, emphasizing germline variants.
MitoMut is a tool to call mitochondrial deletions from next generation sequencing (NGS) data
Barton and Zeng (2018) - Pipeline for testing anavar with simulated data.
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