ontology_config.json

{
  "nodes": [
    {
      "name": "01. Patient information",
      "children": [
        {
          "name": "02. Sex",
          "concept_code": "Individual.gender"
        },
        {
          "name": "01. Date of birth",
          "concept_code": "Individual.birth_date"
        },
        {
          "name": "Taxonomy",
          "concept_code": "Individual.taxonomy"
        },
        {
          "name": "05. Date of death",
          "concept_code": "Individual.death_date"
        },
        {
          "name": "Informed_consent",
          "children": [
            {
              "name": "01. Informed consent type",
              "concept_code": "Individual.ic_type"
            },
            {
              "name": "Informed consent version",
              "concept_code": "Individual.ic_version"
            },
            {
              "name": "02. Date informed Consent given",
              "concept_code": "Individual.ic_given_date"
            },
            {
              "name": "03. Date informed consent withdrawn",
              "concept_code": "Individual.ic_withdrawn_date"
            },
            {
              "name": "04. Report hereditary susceptibility",
              "concept_code": "Individual.report_her_susc"
            }
          ]
        }
      ]
    },
    {
      "name": "02. Diagnosis information",
      "children": [
        {
          "name": "02. Tumor type",
          "concept_code": "Diagnosis.tumor_type"
        },
        {
          "name": "03. Topography",
          "concept_code": "Diagnosis.topography"
        },
        {
          "name": "Treatment",
          "concept_code": "Diagnosis.treatment_protocol"
        },
        {
          "name": "04. Tumor stage",
          "concept_code": "Diagnosis.tumor_stage"
        },
        {
          "name": "01. Date of diagnosis",
          "concept_code": "Diagnosis.diagnosis_date"
        },
        {
          "name": "05. Center of diagnosis",
          "concept_code": "Diagnosis.diagnosis_center"
        }
      ]
    },
    {
      "name": "03. Biosource information",
      "children": [
        {
          "name": "06. Biosource dedicated for specific study",
          "concept_code": "Biosource.biosource_dedicated"
        },
        {
          "name": "01. Biosource parent",
          "concept_code": "Biosource.src_biosource_id"
        },
        {
          "name": "03. Tissue",
          "concept_code": "Biosource.tissue"
        },
        {
          "name": "02. Date of biosource",
          "concept_code": "Biosource.biosource_date"
        },
        {
          "name": "04. Disease status",
          "concept_code": "Biosource.disease_status"
        },
        {
          "name": "05. Tumor percentage",
          "concept_code": "Biosource.tumor_percentage"
        },
        {
          "name": "07. Biosource availability status",
          "concept_code": "Biosource.biosource_status"
        }
      ]
    },
    {
      "name": "04. Biomaterial information",
      "children": [
        {
          "name": "01. Biomaterial parent",
          "concept_code": "Biomaterial.src_biomaterial_id"
        },
        {
          "name": "02. Date of biomaterial",
          "concept_code": "Biomaterial.biomaterial_date"
        },
        {
          "name": "03. Biomaterial type",
          "concept_code": "Biomaterial.type"
        },
        {
          "name": "04. Library strategy",
          "concept_code": "Biomaterial.library_strategy"
        },
        {
          "name": "05. Analysis type",
          "concept_code": "Biomaterial.analysis_type"
        }
      ]
    },
    {
      "name": "05. Study information",
      "children": [
        {
          "name": "01. Study ID",
          "concept_code": "Study.study_id"
        },
        {
          "name": "02. Study acronym",
          "concept_code": "Study.acronym"
        },
        {
          "name": "03. Study title",
          "concept_code": "Study.title"
        },
        {
          "name": "Study datadictionary",
          "concept_code": "Study.datadictionary"
        },
        {
          "name": "04. Individual Study ID",
          "concept_code": "IndividualStudy.individual_study_id"
        }
      ]
    },
    {
      "name": "06. Radiology information",
      "children": [
        {
          "name": "00. Radiology ID",
          "concept_code": "Radiology.radiology_id"
        },
        {
          "name": "01. Examination Date",
          "concept_code": "Radiology.examination_date"
        },
        {
          "name": "02. Image Type",
          "concept_code": "Radiology.image_type"
        },
        {
          "name": "03. Field Strength",
          "concept_code": "Radiology.field_strength"
        },
        {
          "name": "04. Individual ID",
          "concept_code": "Radiology.individual_id"
        },
        {
          "name": "05. Diagnosis ID",
          "concept_code": "Radiology.diagnosis_id"
        },
        {
          "name": "06. Body Part",
          "concept_code": "Radiology.body_part"
        }
      ]
    }
  ]
}