From c4e199df4c03a46a17ef14c50844d650fb74f18c Mon Sep 17 00:00:00 2001 From: TARDIS Bot Date: Thu, 17 Nov 2022 18:50:31 +0000 Subject: [PATCH] Automated changes for post-release 2022.11.17 --- CHANGELOG.md | 51 +++++++++++++++++++++- CITATION.cff | 88 ++++++++++++++++++++------------------ README.rst | 58 +++++++++++++------------ docs/resources/credits.rst | 58 +++++++++++++------------ 4 files changed, 155 insertions(+), 100 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 5dfeeaa4291..4671c4ba321 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,54 @@ ## Change Log +### release-2022.11.17 (2022/11/17 18:45 +00:00) +- [#2155](https://github.com/tardis-sn/tardis/pull/2155) Pre-release 2022.11.17 (#2155) (@tardis-bot) +- [#2152](https://github.com/tardis-sn/tardis/pull/2152) Set specific qgrid feedstock version (#2152) (@andrewfullard) +- [#2140](https://github.com/tardis-sn/tardis/pull/2140) Adding nlte_rate_equation_solver.py (#2140) (@sonachitchyan) +- [#2147](https://github.com/tardis-sn/tardis/pull/2147) Pin setuptools_scm to v6 (#2147) (@epassaro) +- [#2127](https://github.com/tardis-sn/tardis/pull/2127) Possible fix for prerelease workflow (#2127) (@andrewfullard) +- [#2146](https://github.com/tardis-sn/tardis/pull/2146) Add missing cell to download atom data (#2146) (@epassaro) +- [#2136](https://github.com/tardis-sn/tardis/pull/2136) Restructuring NumbaModel (#2136) (@code-explorer) +- [#2132](https://github.com/tardis-sn/tardis/pull/2132) Adding rate matrix index (#2132) (@sonachitchyan) +- [#2130](https://github.com/tardis-sn/tardis/pull/2130) moved helium nlte to a seperate file `helium_nlte.py` (#2130) (@sonachitchyan) +- [#2124](https://github.com/tardis-sn/tardis/pull/2124) Cleaning model state (#2124) (@code-explorer) +- [#2096](https://github.com/tardis-sn/tardis/pull/2096) Small bug fix for He NLTE. (#2096) (@aoife-boyle) +- [#1923](https://github.com/tardis-sn/tardis/pull/1923) Fixing latex_label Parameter within write_to_tex function (#1923) (@bartnikm) +- [#2095](https://github.com/tardis-sn/tardis/pull/2095) Removing outdated documentation and creating developer tools section (#2095) (@smithis7) +- [#2099](https://github.com/tardis-sn/tardis/pull/2099) Arbitrary isotope decay handling and positronium (#2099) (@andrewfullard) +- [#2118](https://github.com/tardis-sn/tardis/pull/2118) Integrating experimental model state (#2118) (@code-explorer) +- [#2120](https://github.com/tardis-sn/tardis/pull/2120) Update arepo docs notebook to be pre-run (#2120) (@AlexHls) +- [#2115](https://github.com/tardis-sn/tardis/pull/2115) added docs for montecarlo packet visualization (#2115) (@jayantbhakar) +- [#2117](https://github.com/tardis-sn/tardis/pull/2117) Runs cells in arepo notebook to avoid downloading files (#2117) (@andrewfullard) +- [#2103](https://github.com/tardis-sn/tardis/pull/2103) New geometry class (#2103) (@code-explorer) +- [#2111](https://github.com/tardis-sn/tardis/pull/2111) New TARDIS flowchart and cleaning up physics walkthrough (#2111) (@smithis7) +- [#2098](https://github.com/tardis-sn/tardis/pull/2098) New Composition Class (#2098) (@code-explorer) +- [#2108](https://github.com/tardis-sn/tardis/pull/2108) Rework Estimators and Convergence Docs (#2108) (@smithis7) +- [#2105](https://github.com/tardis-sn/tardis/pull/2105) Documentation for Features In-Progress (#2105) (@smithis7) +- [#2107](https://github.com/tardis-sn/tardis/pull/2107) Added positronium notes (#2107) (@andrewfullard) +- [#2091](https://github.com/tardis-sn/tardis/pull/2091) Added interaction type in rpacket_tracker (#2091) (@jayantbhakar) +- [#2110](https://github.com/tardis-sn/tardis/pull/2110) removed scatter function from interaction.py (#2110) (@sonachitchyan) +- [#2106](https://github.com/tardis-sn/tardis/pull/2106) Resturcture ABCs import from collections module (#2106) (@rohithvarma3000) +- [#2093](https://github.com/tardis-sn/tardis/pull/2093) Fixing Docs Warnings (#2093) (@smithis7) +- [#2073](https://github.com/tardis-sn/tardis/pull/2073) rpacket_tracker returns dataframe (#2073) (@jayantbhakar) +- [#2104](https://github.com/tardis-sn/tardis/pull/2104) Re-produced PR 1826 (#2104) (@andrewfullard) +- [#2097](https://github.com/tardis-sn/tardis/pull/2097) Creating new docs building instructions (#2097) (@smithis7) +- [#2088](https://github.com/tardis-sn/tardis/pull/2088) Arepo docs fix (#2088) (@AlexHls) +- [#1941](https://github.com/tardis-sn/tardis/pull/1941) Improved arepo parser (#1941) (@AlexHls) +- [#2026](https://github.com/tardis-sn/tardis/pull/2026) Adding physics introduction to documentation (#2026) (@smithis7) +- [#2084](https://github.com/tardis-sn/tardis/pull/2084) Fix broken links in workflow files and goverance md (#2084) (@rohithvarma3000) +- [#2083](https://github.com/tardis-sn/tardis/pull/2083) Moved `trace_packet` to tardis tansport (#2083) (@Rodot-) +- [#2082](https://github.com/tardis-sn/tardis/pull/2082) Added documetation on how to compare environment before update (#2082) (@jaladh-singhal) +- [#2076](https://github.com/tardis-sn/tardis/pull/2076) Modified Function Name in Config validator according to PEP8 (#2076) (@rohithvarma3000) +- [#2062](https://github.com/tardis-sn/tardis/pull/2062) Remove yaml_load_config_file (#2062) (@aman1971) +- [#2052](https://github.com/tardis-sn/tardis/pull/2052) Created a smart HDF Reader which can re-produce simulation object (#2052) (@code-explorer) +- [#2070](https://github.com/tardis-sn/tardis/pull/2070) Pre-release 2022.06.26 (#2070) (@tardis-bot) +- [#2069](https://github.com/tardis-sn/tardis/pull/2069) Wait for pull request creation (#2069) (@epassaro) +- [#2067](https://github.com/tardis-sn/tardis/pull/2067) Begin geometry subfolder (#2067) (@nolanbrown01) +- [#2050](https://github.com/tardis-sn/tardis/pull/2050) Update Jsonschema package to V4 (#2050) (@rohithvarma3000) +- [#2065](https://github.com/tardis-sn/tardis/pull/2065) Continuing geometry restructure (#2065) (@nolanbrown01) +- [#2063](https://github.com/tardis-sn/tardis/pull/2063) Initial geometry restructure (#2063) (@nolanbrown01) +- [#2061](https://github.com/tardis-sn/tardis/pull/2061) Post-release 2022.06.19 (#2061) (@tardis-bot) + ### release-2022.06.19 (2022/06/19 02:25 +00:00) - [#2060](https://github.com/tardis-sn/tardis/pull/2060) Pre-release 2022.06.19 (#2060) (@tardis-bot) - [#2036](https://github.com/tardis-sn/tardis/pull/2036) Restructure code to remove the single_packet_seed field (#2036) (@rohithvarma3000) @@ -596,8 +645,6 @@ - [#1018](https://github.com/tardis-sn/tardis/pull/1018) Updated .mailmap (#1018) (@epassaro) - [#1010](https://github.com/tardis-sn/tardis/pull/1010) Pipeline for comparing reference data (#1010) (@epassaro) - [#1016](https://github.com/tardis-sn/tardis/pull/1016) Removed GH Action for release versions (#1016) (@epassaro) - -### 3.0.dev3388 (2020/01/25 22:36 +00:00) - [#1013](https://github.com/tardis-sn/tardis/pull/1013) Fixed typo (#1013) (@epassaro) - [#1006](https://github.com/tardis-sn/tardis/pull/1006) Trying to get the right version number for automatic release (#1006) (@epassaro) - [#1008](https://github.com/tardis-sn/tardis/pull/1008) Improvements for the update_reference section [docs] (#1008) (@epassaro) diff --git a/CITATION.cff b/CITATION.cff index 044abb1c1f0..bac46c80e82 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -3,8 +3,8 @@ cff-version: 1.0.3 message: If you use this software, please cite it using these metadata. # FIXME title as repository name might not be the best name, please make human readable -title: 'tardis-sn/tardis: TARDIS v2022.06.19' -doi: 10.5281/zenodo.6662839 +title: 'tardis-sn/tardis: TARDIS v2022.11.17' +doi: 10.5281/zenodo.7331855 # FIXME splitting of full names is error prone, please check if given/family name are correct authors: - given-names: Wolfgang @@ -81,10 +81,10 @@ authors: family-names: Fullard affiliation: Michigan State University orcid: https://orcid.org/0000-0001-7343-1678 -- given-names: Kevin - family-names: Cawley - given-names: Isaac family-names: Smith +- given-names: Kevin + family-names: Cawley - given-names: Jaladh family-names: Singhal orcid: https://orcid.org/0000-0002-8310-0829 @@ -107,14 +107,16 @@ authors: orcid: https://orcid.org/0000-0002-8094-6108 - given-names: Arjun family-names: Savel -- given-names: Youssef - family-names: Eweis - given-names: Martin family-names: Reinecke +- given-names: Youssef + family-names: Eweis - given-names: Tomas family-names: Bylund - given-names: Laud family-names: Bentil +- given-names: Sona + family-names: Chitchyan - given-names: Jordi family-names: Eguren orcid: https://orcid.org/0000-0002-2328-8030 @@ -122,86 +124,88 @@ authors: family-names: Alam - given-names: Matthew family-names: Bartnik +- given-names: Rohith + family-names: Varma Buddaraju - given-names: Mark family-names: Magee - given-names: Joshua family-names: Shields - given-names: Ran family-names: Livneh -- given-names: Sona - family-names: Chitchyan -- given-names: Srinath - family-names: Rajagopalan +- given-names: Satwik + family-names: Kambham - given-names: Sashank family-names: Mishra orcid: https://orcid.org/0000-0001-8302-1584 -- given-names: Andreas - family-names: Floers -- given-names: John - family-names: Reichenbach +- given-names: Srinath + family-names: Rajagopalan - given-names: Rinkle family-names: Jain +- given-names: John + family-names: Reichenbach +- given-names: Andreas + family-names: Floers +- given-names: Alexander + family-names: Holas +- given-names: Jayant + family-names: Bhakar - given-names: Antreev family-names: Brar - given-names: Sourav family-names: Singh -- given-names: Caroline - family-names: Sofiatti - given-names: Nathan family-names: Kowalski +- given-names: Aman + family-names: Kumar - given-names: Chinmay family-names: Talegaonkar +- given-names: Caroline + family-names: Sofiatti - given-names: Jonatan family-names: Selsing -- given-names: Parikshit - family-names: Singh Rathore -- given-names: Shilpi - family-names: Prasad - given-names: Shashank family-names: Venkat -- given-names: Rohith - family-names: Varma Buddaraju +- given-names: Nilesh + family-names: Patra - given-names: Pratik family-names: Patel +- given-names: Dmitry + family-names: Volodin +- given-names: Parikshit + family-names: Singh Rathore - given-names: Kevin family-names: Yap -- given-names: Nilesh - family-names: Patra - given-names: Nance family-names: Sarafina - given-names: Musabbiha family-names: Zaheer - given-names: Morgan family-names: Sandler -- given-names: Thom - family-names: Lemoine - given-names: Suyash family-names: Gupta -- given-names: Ashwin - family-names: Nayak U +- given-names: Shilpi + family-names: Prasad +- given-names: Atul + family-names: Kumar +- given-names: Thom + family-names: Lemoine - given-names: Ujjwal family-names: Wahi - given-names: Yash family-names: Aggarwal -- given-names: aman - family-names: kumar - given-names: Sampark family-names: Sharma -- given-names: Dmitry - family-names: Volodin -- given-names: Laureano - family-names: Martinez - given-names: Debajyoti family-names: Dasgupta -- given-names: Alexander - family-names: Holas -- given-names: Atharwa - family-names: Kharkar +- given-names: Laureano + family-names: Martinez - given-names: Chaitanya family-names: Kolliboyina -- given-names: Atul - family-names: Kumar -version: release-2022.06.19 -date-released: 2022-06-19 +- given-names: Ashwin + family-names: Nayak U +- given-names: Atharwa + family-names: Kharkar +version: release-2022.11.17 +date-released: 2022-11-17 repository-code: https://github.com/tardis-sn/tardis license: other-open diff --git a/README.rst b/README.rst index d807f6bd6b6..c58fb7482b1 100644 --- a/README.rst +++ b/README.rst @@ -110,14 +110,14 @@ The following BibTeX entries are needed for the references: adsnote = {Provided by the SAO/NASA Astrophysics Data System} } -.. |CITATION| replace:: kerzendorf_wolfgang_2022_6662839 +.. |CITATION| replace:: kerzendorf_wolfgang_2022_7331855 -.. |DOI_BADGE| image:: https://img.shields.io/badge/DOI-10.5281/zenodo.6662839-blue - :target: https://doi.org/10.5281/zenodo.6662839 +.. |DOI_BADGE| image:: https://img.shields.io/badge/DOI-10.5281/zenodo.7331855-blue + :target: https://doi.org/10.5281/zenodo.7331855 .. code-block:: bibtex - @software{kerzendorf_wolfgang_2022_6662839, + @software{kerzendorf_wolfgang_2022_7331855, author = {Kerzendorf, Wolfgang and Sim, Stuart and Vogl, Christian and @@ -142,8 +142,8 @@ The following BibTeX entries are needed for the references: Barna, Barnabás and Gautam, Gaurav and Fullard, Andrew and - Cawley, Kevin and Smith, Isaac and + Cawley, Kevin and Singhal, Jaladh and Arya, Atharva and Barbosa, Talytha and @@ -154,59 +154,61 @@ The following BibTeX entries are needed for the references: Varanasi, Kaushik and Gillanders, James and Savel, Arjun and - Eweis, Youssef and Reinecke, Martin and + Eweis, Youssef and Bylund, Tomas and Bentil, Laud and + Chitchyan, Sona and Eguren, Jordi and Alam, Arib and Bartnik, Matthew and + Varma Buddaraju, Rohith and Magee, Mark and Shields, Joshua and Livneh, Ran and - Chitchyan, Sona and - Rajagopalan, Srinath and + Kambham, Satwik and Mishra, Sashank and - Floers, Andreas and - Reichenbach, John and + Rajagopalan, Srinath and Jain, Rinkle and + Reichenbach, John and + Floers, Andreas and + Holas, Alexander and + Bhakar, Jayant and Brar, Antreev and Singh, Sourav and - Sofiatti, Caroline and Kowalski, Nathan and + Kumar, Aman and Talegaonkar, Chinmay and + Sofiatti, Caroline and Selsing, Jonatan and - Singh Rathore, Parikshit and - Prasad, Shilpi and Venkat, Shashank and - Varma Buddaraju, Rohith and + Patra, Nilesh and Patel, Pratik and + Volodin, Dmitry and + Singh Rathore, Parikshit and Yap, Kevin and - Patra, Nilesh and Sarafina, Nance and Zaheer, Musabbiha and Sandler, Morgan and - Lemoine, Thom and Gupta, Suyash and - Nayak U, Ashwin and + Prasad, Shilpi and + Kumar, Atul and + Lemoine, Thom and Wahi, Ujjwal and Aggarwal, Yash and - kumar, aman and Sharma, Sampark and - Volodin, Dmitry and - Martinez, Laureano and Dasgupta, Debajyoti and - Holas, Alexander and - Kharkar, Atharwa and + Martinez, Laureano and Kolliboyina, Chaitanya and - Kumar, Atul}, - title = {tardis-sn/tardis: TARDIS v2022.06.19}, - month = jun, + Nayak U, Ashwin and + Kharkar, Atharwa}, + title = {tardis-sn/tardis: TARDIS v2022.11.17}, + month = nov, year = 2022, publisher = {Zenodo}, - version = {release-2022.06.19}, - doi = {10.5281/zenodo.6662839}, - url = {https://doi.org/10.5281/zenodo.6662839} + version = {release-2022.11.17}, + doi = {10.5281/zenodo.7331855}, + url = {https://doi.org/10.5281/zenodo.7331855} } ******* diff --git a/docs/resources/credits.rst b/docs/resources/credits.rst index 09d31041d10..e4b929aebcb 100644 --- a/docs/resources/credits.rst +++ b/docs/resources/credits.rst @@ -74,14 +74,14 @@ The following BibTeX entries are needed for the references: adsnote = {Provided by the SAO/NASA Astrophysics Data System} } -.. |CITATION| replace:: kerzendorf_wolfgang_2022_6662839 +.. |CITATION| replace:: kerzendorf_wolfgang_2022_7331855 -.. |DOI_BADGE| image:: https://img.shields.io/badge/DOI-10.5281/zenodo.6662839-blue - :target: https://doi.org/10.5281/zenodo.6662839 +.. |DOI_BADGE| image:: https://img.shields.io/badge/DOI-10.5281/zenodo.7331855-blue + :target: https://doi.org/10.5281/zenodo.7331855 .. code-block:: bibtex - @software{kerzendorf_wolfgang_2022_6662839, + @software{kerzendorf_wolfgang_2022_7331855, author = {Kerzendorf, Wolfgang and Sim, Stuart and Vogl, Christian and @@ -106,8 +106,8 @@ The following BibTeX entries are needed for the references: Barna, Barnabás and Gautam, Gaurav and Fullard, Andrew and - Cawley, Kevin and Smith, Isaac and + Cawley, Kevin and Singhal, Jaladh and Arya, Atharva and Barbosa, Talytha and @@ -118,58 +118,60 @@ The following BibTeX entries are needed for the references: Varanasi, Kaushik and Gillanders, James and Savel, Arjun and - Eweis, Youssef and Reinecke, Martin and + Eweis, Youssef and Bylund, Tomas and Bentil, Laud and + Chitchyan, Sona and Eguren, Jordi and Alam, Arib and Bartnik, Matthew and + Varma Buddaraju, Rohith and Magee, Mark and Shields, Joshua and Livneh, Ran and - Chitchyan, Sona and - Rajagopalan, Srinath and + Kambham, Satwik and Mishra, Sashank and - Floers, Andreas and - Reichenbach, John and + Rajagopalan, Srinath and Jain, Rinkle and + Reichenbach, John and + Floers, Andreas and + Holas, Alexander and + Bhakar, Jayant and Brar, Antreev and Singh, Sourav and - Sofiatti, Caroline and Kowalski, Nathan and + Kumar, Aman and Talegaonkar, Chinmay and + Sofiatti, Caroline and Selsing, Jonatan and - Singh Rathore, Parikshit and - Prasad, Shilpi and Venkat, Shashank and - Varma Buddaraju, Rohith and + Patra, Nilesh and Patel, Pratik and + Volodin, Dmitry and + Singh Rathore, Parikshit and Yap, Kevin and - Patra, Nilesh and Sarafina, Nance and Zaheer, Musabbiha and Sandler, Morgan and - Lemoine, Thom and Gupta, Suyash and - Nayak U, Ashwin and + Prasad, Shilpi and + Kumar, Atul and + Lemoine, Thom and Wahi, Ujjwal and Aggarwal, Yash and - kumar, aman and Sharma, Sampark and - Volodin, Dmitry and - Martinez, Laureano and Dasgupta, Debajyoti and - Holas, Alexander and - Kharkar, Atharwa and + Martinez, Laureano and Kolliboyina, Chaitanya and - Kumar, Atul}, - title = {tardis-sn/tardis: TARDIS v2022.06.19}, - month = jun, + Nayak U, Ashwin and + Kharkar, Atharwa}, + title = {tardis-sn/tardis: TARDIS v2022.11.17}, + month = nov, year = 2022, publisher = {Zenodo}, - version = {release-2022.06.19}, - doi = {10.5281/zenodo.6662839}, - url = {https://doi.org/10.5281/zenodo.6662839} + version = {release-2022.11.17}, + doi = {10.5281/zenodo.7331855}, + url = {https://doi.org/10.5281/zenodo.7331855} }