Added another link to the overview page.

Author: pcarbo

docs/index.html

@@ -13,7 +13,7 @@
 
 <title>Single-cell matrix factorization jamboree</title>
 
-<script src="site_libs/header-attrs-2.28/header-attrs.js"></script>
+<script src="site_libs/header-attrs-2.26/header-attrs.js"></script>
 <script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
 <meta name="viewport" content="width=device-width, initial-scale=1" />
 <link href="site_libs/bootstrap-3.3.5/css/readable.min.css" rel="stylesheet" />
@@ -299,7 +299,7 @@ <h1 class="title toc-ignore">Single-cell matrix factorization
 <div class="tab-content">
 <div id="summary" class="tab-pane fade in active">
 <p>
-<strong>Last updated:</strong> 2025-02-12
+<strong>Last updated:</strong> 2025-02-18
 </p>
 <p>
 <strong>Checks:</strong> <span
@@ -347,15 +347,15 @@ <h1 class="title toc-ignore">Single-cell matrix factorization
 <div class="panel panel-default">
 <div class="panel-heading">
 <p class="panel-title">
-<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRepositoryversionstrongahrefhttpsgithubcomstephenslabsinglecelljamboreetreeb61d032b50f81760dc566857f4b3d8a103fb2468targetblankb61d032a">
+<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRepositoryversionstrongahrefhttpsgithubcomstephenslabsinglecelljamboreetreef51fb05920cab4f7992f1c2888c90ece988c5ee6targetblankf51fb05a">
 <span class="glyphicon glyphicon-ok text-success"
 aria-hidden="true"></span> <strong>Repository version:</strong>
-<a href="https://github.com/stephenslab/single-cell-jamboree/tree/b61d032b50f81760dc566857f4b3d8a103fb2468" target="_blank">b61d032</a>
+<a href="https://github.com/stephenslab/single-cell-jamboree/tree/f51fb05920cab4f7992f1c2888c90ece988c5ee6" target="_blank">f51fb05</a>
 </a>
 </p>
 </div>
 <div
-id="strongRepositoryversionstrongahrefhttpsgithubcomstephenslabsinglecelljamboreetreeb61d032b50f81760dc566857f4b3d8a103fb2468targetblankb61d032a"
+id="strongRepositoryversionstrongahrefhttpsgithubcomstephenslabsinglecelljamboreetreef51fb05920cab4f7992f1c2888c90ece988c5ee6targetblankf51fb05a"
 class="panel-collapse collapse">
 <div class="panel-body">
 <p>
@@ -365,7 +365,7 @@ <h1 class="title toc-ignore">Single-cell matrix factorization
 </p>
 <p>
 The results in this page were generated with repository version
-<a href="https://github.com/stephenslab/single-cell-jamboree/tree/b61d032b50f81760dc566857f4b3d8a103fb2468" target="_blank">b61d032</a>.
+<a href="https://github.com/stephenslab/single-cell-jamboree/tree/f51fb05920cab4f7992f1c2888c90ece988c5ee6" target="_blank">f51fb05</a>.
 See the <em>Past versions</em> tab to see a history of the changes made
 to the R Markdown and HTML files.
 </p>
@@ -379,28 +379,11 @@ <h1 class="title toc-ignore">Single-cell matrix factorization
 were generated:
 </p>
 <pre><code>
-Ignored files:
-    Ignored:    .Rhistory
-    Ignored:    .Rproj.user/
-    Ignored:    analysis/.Rhistory
-    Ignored:    code/.Rhistory
-
 Untracked files:
-    Untracked:  .DS_Store
-    Untracked:  analysis/.DS_Store
-    Untracked:  analysis/mouse_embryo_slide14.Rmd
-    Untracked:  code/.DS_Store
-    Untracked:  code/analysis_mouse_slide14.R
-    Untracked:  code/analysis_mouse_slide14_midway3.R
-    Untracked:  code/group_factors.R
-    Untracked:  code/mouse_embryo_data_slide_selection.R
-    Untracked:  code/plot_loadings_on_locations.R
-    Untracked:  code/plot_spatialPCs.R
-    Untracked:  code/run_spatialpca.sbatch
-    Untracked:  data/.DS_Store
-    Untracked:  data/mouse_embryo/
-    Untracked:  output/.DS_Store
-    Untracked:  output/mouse_embryo/
+    Untracked:  data/GSE132188_adata.h5ad.h5
+    Untracked:  data/Immune_ALL_human.h5ad
+    Untracked:  data/pancreas_endocrine.RData
+    Untracked:  data/pancreas_endocrine_alldays.h5ad
 
 </code></pre>
 <p>
@@ -415,6 +398,7 @@ <h1 class="title toc-ignore">Single-cell matrix factorization
 <hr>
 </div>
 <div id="versions" class="tab-pane fade">
+
 <p>
 These are the previous versions of the repository in which changes were
 made to the R Markdown (<code>analysis/index.Rmd</code>) and HTML
@@ -449,6 +433,40 @@ <h1 class="title toc-ignore">Single-cell matrix factorization
 Rmd
 </td>
 <td>
+<a href="https://github.com/stephenslab/single-cell-jamboree/blob/f51fb05920cab4f7992f1c2888c90ece988c5ee6/analysis/index.Rmd" target="_blank">f51fb05</a>
+</td>
+<td>
+Peter Carbonetto
+</td>
+<td>
+2025-02-18
+</td>
+<td>
+workflowr::wflow_publish("index.Rmd", verbose = TRUE)
+</td>
+</tr>
+<tr>
+<td>
+html
+</td>
+<td>
+<a href="https://rawcdn.githack.com/stephenslab/single-cell-jamboree/a0e7a31067f945471db05ac30c93f88cb8e43db8/docs/index.html" target="_blank">a0e7a31</a>
+</td>
+<td>
+Ziang Zhang
+</td>
+<td>
+2025-02-12
+</td>
+<td>
+Build site.
+</td>
+</tr>
+<tr>
+<td>
+Rmd
+</td>
+<td>
 <a href="https://github.com/stephenslab/single-cell-jamboree/blob/b61d032b50f81760dc566857f4b3d8a103fb2468/analysis/index.Rmd" target="_blank">b61d032</a>
 </td>
 <td>
@@ -1320,10 +1338,12 @@ <h1 class="title toc-ignore">Single-cell matrix factorization
 the pancreas data set.</a></p></li>
 <li><p><a href="pancreas_another_look.html">Another look at matrix
 factorization for the pancreas data.</a></p></li>
+<li><p><a href="pancreas_annotate.html">Annotation of pancreas
+factors.</a></p></li>
 <li><p><a href="pancreas_trees.html">Tree-based representations of the
 pancreas data.</a></p></li>
-<li><p><a href="pancreas_group.html">Explorating group-specific factors
-of the pancreas data.</a></p></li>
+<li><p><a href="pancreas_group.html">Exploring group-specific factors of
+the pancreas data.</a></p></li>
 <li><p><a href="pancreas_snmf.html">Revisiting semi-NMF for the pancreas
 data</a></p></li>
 <li><p><a href="Exploration_pancreas_data_using_Seurat.html">Improved
@@ -1335,11 +1355,6 @@ <h1 class="title toc-ignore">Single-cell matrix factorization
 <li><p><a href="mouse_embryo.html">Analysis of Single-Cell (Spatial)
 Transcriptomics From Mouse Embryos</a></p></li>
 </ul>
-</div>
-</div>
-</div>
-</div>
-</div>
 
 
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