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Edited a note about interpretation to the pancreas_annotate analysis.
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analysis/pancreas_annotate.Rmd

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@@ -157,9 +157,9 @@ Visually, this plot looks quite similar to before, but now the effect
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sizes are on a different scale. With this rescaling, the effect sizes
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have the following interpretation:
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$f_{jk}$ is (approximately) the *log-fold change* (LFC) of gene $j$
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in a cell $i$ with the largest membership in factor $k$ ($l_{ik} =
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1$) relative to a cell $i'$ with no membership in factor $k$
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($l_{i'k} = 0$).
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$f_{jk}$ is (approximately) the log-fold change (LFC) of gene $j$ in
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a hypothetical cell $i$ with the largest possible membership to factor
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$k$ ($l_{ik} = 1$) relative to another hypothetical cell $i'$ with no
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membership to factor $k$ ($l_{i'k} = 0$).
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[fastTopics]: https://github.com/stephenslab/fastTopics/

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