You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
with the addition of compare --distance in #2225, it turns out that sourmash plot doesn't like distance matrices 🤔 . In particular, scipy linkage doesn't like it - with #2225,
/Users/t/dev/sourmash/src/sourmash/commands.py:297: ClusterWarning: scipy.cluster: The symmetric non-negative hollow observation matrix looks suspiciously like an uncondensed distance matrix
Y = sch.linkage(D, method='single')
we could/should autodetect/warn in situations where the diagonal isn't 1, and/or where the matrix isn't symmetric. (we already do for matrices with values outside of [0, 1].)
The text was updated successfully, but these errors were encountered:
with the addition of
compare --distance
in #2225, it turns out thatsourmash plot
doesn't like distance matrices 🤔 . In particular, scipy linkage doesn't like it - with #2225,I get:
we could/should autodetect/warn in situations where the diagonal isn't 1, and/or where the matrix isn't symmetric. (we already do for matrices with values outside of [0, 1].)
The text was updated successfully, but these errors were encountered: