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provide both abundance-weighted coverage & flattened coverage in sourmash gather output? #1818

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ctb opened this issue Feb 2, 2022 · 0 comments · Fixed by #2301
Closed

provide both abundance-weighted coverage & flattened coverage in sourmash gather output? #1818

ctb opened this issue Feb 2, 2022 · 0 comments · Fixed by #2301

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@ctb
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ctb commented Feb 2, 2022

when looking at #1805, I realized that it would be nice to get both flat and abundance-weighted coverage of metagenomes when running gather. Unfortunately I don't think that's currently tracked internally, so it's a bigger change than just printing something additional out, but it would be convenient.

(Specifically, both the CSV output and the text output should contain this information.)
@ctb ctb mentioned this issue Feb 2, 2022
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@ctb ctb mentioned this issue Feb 21, 2022
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@ctb ctb mentioned this issue Mar 12, 2022
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@ctb ctb mentioned this issue Jul 12, 2022
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This was referenced Sep 26, 2022
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@ctb ctb closed this as completed in #2301 Sep 28, 2022
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[MRG] report both weighted and unweighted % recovered in gather sourmash-bio/sourmash
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