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setup.py
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import os
from setuptools import setup, find_packages
def version():
setup_dir = os.path.dirname(os.path.realpath(__file__))
version_file = open(os.path.join(setup_dir, 'MetaCHIP', 'VERSION'))
return version_file.readline().strip()
__long_description__ = '''
MetaCHIP: community-level HGT identification pipeline
Weizhi Song (songwz03@gmail.com)
The Centre for Marine Bio-Innovation (CMB),
University of New South Wales, Sydney, Australia
'''
setup(name="MetaCHIP",
version=version(),
long_description=__long_description__,
license="GPL3+",
author="Weizhi Song, Torsten Thomas",
author_email="songwz03@gmail.com",
keywords="Bioinformatics Metagenomics HGT_detection",
description="HGT detection pipeline",
url="https://github.com/songweizhi/MetaCHIP",
packages=['MetaCHIP'],
package_data={'': ['*.r', '*.R', '*.py', '*.hmm', 'VERSION', 'Ranger-DTL-Dated.mac', 'Ranger-DTL-Dated.linux']},
include_package_data=True,
install_requires=['biopython', 'matplotlib', 'numpy', 'scipy', 'reportlab', 'ete3'],
scripts=['bin/MetaCHIP'])