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_config.yml
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# In _config.yml
title: "STATS 305B: Models and Algorithms for Discrete Data"
author: Scott Linderman
copyright: "2025"
execute:
execute_notebooks: force
exclude_patterns:
- 'hw0.ipynb'
- '01_distributions.ipynb'
- '02_contingency_tables_v2.ipynb'
- '03_logreg.ipynb'
- '04_expfam.ipynb'
- '05_glms.ipynb'
- '05_glms_solns.ipynb'
- '06_sparse_glms.ipynb'
- '06_sparse_glms_solns.ipynb'
- 'hw1.ipynb'
- 'hw2.ipynb'
- 'hw2_solutions.ipynb'
- 'hw3.ipynb'
- 'hw4.ipynb'
- '07_bayes_glms.ipynb'
- '07_bayes_glms_soln.ipynb'
- '11_vaes_demo.ipynb'
only_build_toc_files: true
# Add a bibtex file so that we can create citations
bibtex_bibfiles:
- references.bib
# In _config.yml
sphinx:
extra_extensions:
- sphinx_proof
config:
bibtex_reference_style: label
mathjax_path: https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js
mathjax3_config:
tex:
macros:
"mba": "\\boldsymbol{a}"
"mbb": "\\boldsymbol{b}"
"mbc": "\\boldsymbol{c}"
"mbd": "\\boldsymbol{d}"
"mbe": "\\boldsymbol{e}"
"mbf": "\\boldsymbol{f}"
"mbg": "\\boldsymbol{g}"
"mbh": "\\boldsymbol{h}"
"mbi": "\\boldsymbol{i}"
"mbj": "\\boldsymbol{j}"
"mbk": "\\boldsymbol{k}"
"mbl": "\\boldsymbol{l}"
"mbm": "\\boldsymbol{m}"
"mbn": "\\boldsymbol{n}"
"mbo": "\\boldsymbol{o}"
"mbp": "\\boldsymbol{p}"
"mbq": "\\boldsymbol{q}"
"mbr": "\\boldsymbol{r}"
"mbs": "\\boldsymbol{s}"
"mbt": "\\boldsymbol{t}"
"mbu": "\\boldsymbol{u}"
"mbv": "\\boldsymbol{v}"
"mbw": "\\boldsymbol{w}"
"mbx": "\\boldsymbol{x}"
"mby": "\\boldsymbol{y}"
"mbz": "\\boldsymbol{z}"
"mbA": "\\boldsymbol{A}"
"mbB": "\\boldsymbol{B}"
"mbC": "\\boldsymbol{C}"
"mbD": "\\boldsymbol{D}"
"mbE": "\\boldsymbol{E}"
"mbF": "\\boldsymbol{F}"
"mbG": "\\boldsymbol{G}"
"mbH": "\\boldsymbol{H}"
"mbI": "\\boldsymbol{I}"
"mbJ": "\\boldsymbol{J}"
"mbK": "\\boldsymbol{K}"
"mbL": "\\boldsymbol{L}"
"mbM": "\\boldsymbol{M}"
"mbN": "\\boldsymbol{N}"
"mbO": "\\boldsymbol{O}"
"mbP": "\\boldsymbol{P}"
"mbQ": "\\boldsymbol{Q}"
"mbR": "\\boldsymbol{R}"
"mbS": "\\boldsymbol{S}"
"mbT": "\\boldsymbol{T}"
"mbU": "\\boldsymbol{U}"
"mbV": "\\boldsymbol{V}"
"mbW": "\\boldsymbol{W}"
"mbX": "\\boldsymbol{X}"
"mbY": "\\boldsymbol{Y}"
"mbZ": "\\boldsymbol{Z}"
"bbA": "\\mathbb{A}"
"bbB": "\\mathbb{B}"
"bbC": "\\mathbb{C}"
"bbD": "\\mathbb{D}"
"bbE": "\\mathbb{E}"
"bbG": "\\mathbb{G}"
"bbH": "\\mathbb{H}"
"bbI": "\\mathbb{I}"
"bbJ": "\\mathbb{J}"
"bbK": "\\mathbb{K}"
"bbL": "\\mathbb{L}"
"bbM": "\\mathbb{M}"
"bbN": "\\mathbb{N}"
"bbO": "\\mathbb{O}"
"bbP": "\\mathbb{P}"
"bbQ": "\\mathbb{Q}"
"bbR": "\\mathbb{R}"
"bbS": "\\mathbb{S}"
"bbT": "\\mathbb{T}"
"bbU": "\\mathbb{U}"
"bbV": "\\mathbb{V}"
"bbW": "\\mathbb{W}"
"bbX": "\\mathbb{X}"
"bbY": "\\mathbb{Y}"
"bbZ": "\\mathbb{Z}"
"cA": "\\mathcal{A}"
"cB": "\\mathcal{B}"
"cC": "\\mathcal{C}"
"cD": "\\mathcal{D}"
"cE": "\\mathcal{E}"
"cG": "\\mathcal{G}"
"cH": "\\mathcal{H}"
"cI": "\\mathcal{I}"
"cJ": "\\mathcal{J}"
"cK": "\\mathcal{K}"
"cL": "\\mathcal{L}"
"cM": "\\mathcal{M}"
"cN": "\\mathcal{N}"
"cO": "\\mathcal{O}"
"cP": "\\mathcal{P}"
"cQ": "\\mathcal{Q}"
"cR": "\\mathcal{R}"
"cS": "\\mathcal{S}"
"cT": "\\mathcal{T}"
"cU": "\\mathcal{U}"
"cV": "\\mathcal{V}"
"cW": "\\mathcal{W}"
"cX": "\\mathcal{X}"
"cY": "\\mathcal{Y}"
"cZ": "\\mathcal{Z}"
"mbalpha": "\\boldsymbol{\\alpha}"
"mbbeta": "\\boldsymbol{\\beta}"
"mbgamma": "\\boldsymbol{\\gamma}"
"mbdelta": "\\boldsymbol{\\delta}"
"mbepsilon": "\\boldsymbol{\\epsilon}"
"mbchi": "\\boldsymbol{\\chi}"
"mbeta": "\\boldsymbol{\\eta}"
"mbiota": "\\boldsymbol{\\iota}"
"mbkappa": "\\boldsymbol{\\kappa}"
"mblambda": "\\boldsymbol{\\lambda}"
"mbmu": "\\boldsymbol{\\mu}"
"mbnu": "\\boldsymbol{\\nu}"
"mbomega": "\\boldsymbol{\\omega}"
"mbtheta": "\\boldsymbol{\\theta}"
"mbphi": "\\boldsymbol{\\phi}"
"mbpi": "\\boldsymbol{\\pi}"
"mbpsi": "\\boldsymbol{\\psi}"
"mbrho": "\\boldsymbol{\\rho}"
"mbsigma": "\\boldsymbol{\\sigma}"
"mbtau": "\\boldsymbol{\\tau}"
"mbupsilon": "\\boldsymbol{\\upsilon}"
"mbxi": "\\boldsymbol{\\xi}"
"mbzeta": "\\boldsymbol{\\zeta}"
"mbvarepsilon": "\\boldsymbol{\\varepsilon}"
"mbvarphi": "\\boldsymbol{\\varphi}"
"mbvartheta": "\\boldsymbol{\\vartheta}"
"mbvarrho": "\\boldsymbol{\\varrho}"
"mbDelta": "\\boldsymbol{\\Delta}"
"mbGamma": "\\boldsymbol{\\Gamma}"
"mbLambda": "\\boldsymbol{\\Lambda}"
"mbOmega": "\\boldsymbol{\\Omega}"
"mbPhi": "\\boldsymbol{\\Phi}"
"mbPsi": "\\boldsymbol{\\Psi}"
"mbPi": "\\boldsymbol{\\Pi}"
"mbSigma": "\\boldsymbol{\\Sigma}"
"mbTheta": "\\boldsymbol{\\Theta}"
"mbUpsilon": "\\boldsymbol{\\Upsilon}"
"mbXi": "\\boldsymbol{\\Xi}"
"mbzero" : "\\boldsymbol{0}"
"mbone" : "\\boldsymbol{1}"
"iid": ["\\stackrel{\\text{iid}}{#1}", 1]
"ind": ["\\stackrel{\\text{ind}}{#1}", 1]
"dif": "\\mathop{}\\!\\mathrm{d}"
"diag": "\\textrm{diag}"
"supp": "\\textrm{supp}"
"Tr": "\\textrm{Tr}"
"E": "\\mathbb{E}"
"Var": "\\textrm{Var}"
"Cov": "\\textrm{Cov}"
"reals": "\\mathbb{R}"
"naturals": "\\mathbb{N}"
"KL": ["D_{\\textrm{KL}}\\left(#1\\;\\|\\;#2\\right)", 2]
parse:
myst_enable_extensions: # default extensions to enable in the myst parser. See https://myst-parser.readthedocs.io/en/latest/using/syntax-optional.html
- amsmath
- colon_fence
# - deflist
- dollarmath
# - html_admonition
# - html_image
- linkify
# - replacements
# - smartquotes
- substitution
- tasklist
myst_url_schemes: [mailto, http, https] # URI schemes that will be recognised as external URLs in Markdown links
myst_dmath_double_inline: true # Allow display math ($$) within an inline context
# Information about where the book exists on the web
repository:
url : https://github.com/slinderman/stats305b # Online location of your book
branch : winter2025 # Which branch of the repository should be used when creating links (optional)
launch_buttons:
binderhub_url: ""
colab_url: "https://colab.research.google.com"