DESCRIPTION

Package: NetPathMiner
Version: 1.5.2
Date: 2014 onwards
Title: NetPathMiner for Biological Network Construction, Path Mining
    and Visualization
Author: Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp>, Tim Hancock
    <timothy.hancock@kuicr.kyoto-u.ac.jp>, Ichigaku Takigawa
    <takigawa@kuicr.kyoto-u.ac.jp>, Nicolas Wicker
    <nicolas.wicker@unistra.fr>
Maintainer: Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp>
Description: NetPathMiner is a general framework for network path
    mining using genome-scale networks. It constructs networks from
    KGML, SBML and BioPAX files, providing three network
    representations, metabolic, reaction and gene representations.
    NetPathMiner finds active paths and applies machine learning
    methods to summarize found paths for easy interpretation. It
    also provides static and interactive visualizations of networks
    and paths to aid manual investigation.
Depends:
    R (>= 3.0.2),
    igraph (>= 1.0)
Suggests:
    rBiopaxParser (>= 2.1),
    RCurl,
    RCytoscape,
		graph
License: GPL (>= 2)
URL: https://github.com/ahmohamed/NetPathMiner
NeedsCompilation: yes
SystemRequirements: libxml2, libSBML (>= 5.5)
Biarch: TRUE
biocViews: GraphAndNetwork, Pathways, Network, Clustering,
    Classification