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add r wrapper function to run python validation #9
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required python pkgs per https://github.com/reichlab/covid19-forecast-hub/blob/master/visualization/requirements.txt
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the functionality from
digging in here and basically all that the single forecast vaildation script did was call a function from single py module ( there is more to validation though ... the other python scripts that C19FH maintains (and are now pulled into the misc/validation dir in this repo) do things like checking metadata files, looping over many forecast files, etc. there are also the R scripts (no longer maintained by C19FH?) but pulled over and working (for now?) in this repo we can revisit validation workflows later. for now, this wrapper function works to make sure the quantile csv format is not broken |
see #6
this function should wrap the validation
.py
script provided by C19FH:https://github.com/reichlab/covid19-forecast-hub/blob/master/code/validation/test_formatting.py
we can call it with a
system()
command orreticulate
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