makefile.config

# directories
ifneq ("$(wildcard $(PREFIX)makefile.dep)","")
      include $(PREFIX)makefile.dep
endif
PREREQ += $(PREFIX)./
DIRECTORIES:=$(sort $(PREREQ))
INCLUDE_PATHS:=$(realpath $(patsubst %, %/include, $(DIRECTORIES)))
LIBRARY_PATHS:=$(realpath $(patsubst %, %/lib, $(DIRECTORIES)))
OBJDIR := ./build
SRCDIR := ./source
COMMA:=,
# Set make variables CC, CXX, CXXFLAGS, LDFLAGS, LDLIBS
CC := mpicxx
CXX := mpicxx
CXXFLAGS := -std=c++11 $(USER_CXX_FLAGS) -O3 -DNDEBUG -ftemplate-depth-2048
CXXFLAGS += $(patsubst %,-I%,$(INCLUDE_PATHS))
LDFLAGS += $(patsubst %,-L%,$(LIBRARY_PATHS))
LDFLAGS += $(patsubst %,-Wl$(COMMA)-rpath$(COMMA)"%",$(LIBRARY_PATHS))
CXXFLAGS += -I$(MODELDIR)
LDLIBS := -lboost_serialization -lboost_thread -lboost_system -lboost_chrono
LDLIBS += -lX11 -lmpfr -lgmp
LDLIBS += -lsdsl -ldivsufsort -ldivsufsort64

# ADD OPTIONAL CAPD SUPPORT IF REQUESTED
ifeq ($(USE_CAPD),yes)
CXXFLAGS += `capd-config --cflags`
LDLIBS += `capd-config --libs`
endif