Sandbox

The sandbox exists to experiment with code, in particular standalone scripts

Usage

When adding a script to the sandbox, try and do the following:

• Add a docstring to the top of the file (using triple quotes)
• if the script will be callable from the command-line (which it probably will be) put an if name == 'main': statement at the end of the script
• Add a summary of the script, including filename and brief description below

Scripts

• empty.py - contains nothing, acts as a template/placeholder
• file2vertices.py - contains an algorithm to extract vertices from different file types and make them cyclical, currently does not work
• point_in_polygon.py - experimental 2D point in polygon code
• old_polygons.py- old functions from origamiUROP.polygons
• find_crossovers.py - experimental algorithms which could be used to determine row sizes for DNA lattices which have multiple columns as opposed to one in DNA Snake. Also contains updated find_crossover_locations function.
• staples_from_route - new set of Staple classes based off of DNANode and DNAEdge for the generation of staples using the scaffold strand route LatticeRoute