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Copy Number signature analysis on TCGA data

Investigating copy number (CN) signatures on 20 breast cancer samples from TCGA. Analysis uses COSMIC CN signatures (https://cancer.sanger.ac.uk/signatures/sbs/)

src

Contains scripts to:

  1. Generate CN context profile from txt file containing CNAs
  2. Generate CN signatures from context
  3. Generate CN signature decomposition plot

test

Contains scripts to test functions