From 8660301ec66a4b1ba962929207c68032038df979 Mon Sep 17 00:00:00 2001 From: stefanpeidli Date: Mon, 30 Sep 2024 17:42:39 +0200 Subject: [PATCH] Fix missing call of umap calculation in test label transfer --- .../tools/_perturbation_space/test_simple_perturbation_space.py | 1 + 1 file changed, 1 insertion(+) diff --git a/tests/tools/_perturbation_space/test_simple_perturbation_space.py b/tests/tools/_perturbation_space/test_simple_perturbation_space.py index 4475f711..bc2559f8 100644 --- a/tests/tools/_perturbation_space/test_simple_perturbation_space.py +++ b/tests/tools/_perturbation_space/test_simple_perturbation_space.py @@ -246,6 +246,7 @@ def test_label_transfer(): ps.label_transfer(adata) sc.pp.neighbors(adata, use_rep="X") + sc.tl.umap(adata) ps = pt.tl.PseudobulkSpace() ps.label_transfer(adata) assert "unknown" not in adata.obs["perturbation"]