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deviser.py
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#!/usr/bin/env python
#
# @file deviser.py
# @brief command line tool for invoking the deviser scripts
# @author Frank Bergmann
# @author Sarah Keating
#
# <!--------------------------------------------------------------------------
#
# Copyright (c) 2013-2018 by the California Institute of Technology
# (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
# and the University of Heidelberg (Germany), with support from the National
# Institutes of Health (USA) under grant R01GM070923. All rights reserved.
#
# Permission is hereby granted, free of charge, to any person obtaining a
# copy of this software and associated documentation files (the "Software"),
# to deal in the Software without restriction, including without limitation
# the rights to use, copy, modify, merge, publish, distribute, sublicense,
# and/or sell copies of the Software, and to permit persons to whom the
# Software is furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
# THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
# DEALINGS IN THE SOFTWARE.
#
# Neither the name of the California Institute of Technology (Caltech), nor
# of the European Bioinformatics Institute (EMBL-EBI), nor of the University
# of Heidelberg, nor the names of any contributors, may be used to endorse
# or promote products derived from this software without specific prior
# written permission.
# ------------------------------------------------------------------------ -->
#
"""
Example usage (it is best used from within an `output` directory):
python ../generator/deviser.py -g ../samples/dyn.xml
python -m generator.deviser
"""
import sys
from deviser.util import global_variables as gv
from deviser.__main__ import generateLaTeXFor, generatePackageFor, run_generation
def main(args=None):
"""Usage: deviser [--generate | --latex ] input-filename
This program will use a Deviser xml file, and generate either a C++
libSBML extension for it, or generate a LaTeX scaffold for its
specification.
"""
if args is None:
args = sys.argv
return run_generation((args))
if __name__ == '__main__':
if gv.code_returned == gv.return_codes['success']:
try:
main()
sys.exit(gv.code_returned)
except Exception as ex:
print('\nAn exception was raised while running deviser: \"{}\"'.format(ex))
sys.exit(gv.code_returned)
else:
sys.exit(gv.code_returned)