diff --git a/.DS_Store b/.DS_Store index 285b77c..4f4a9db 100644 Binary files a/.DS_Store and b/.DS_Store differ diff --git a/.gitignore b/.gitignore index 0ad7b14..e5e7d95 100644 --- a/.gitignore +++ b/.gitignore @@ -8,3 +8,7 @@ pathologyarticles packrat/src/ data/ Neurosurgery-Articles +VOSviewer +CitNetExplorer +CiteSpaceV +Pediatric-Surgery diff --git a/BibliographicStudies.Rmd b/BibliographicStudies.Rmd index e6ec1df..d9dafce 100644 --- a/BibliographicStudies.Rmd +++ b/BibliographicStudies.Rmd @@ -91,6 +91,20 @@ In this analysis we aimed to identify the common research topics Turkish patholo +--- + + + + +--- + + + +--- + + + + --- # Sources Used For Analysis diff --git a/BibliographicStudies.nb.html b/BibliographicStudies.nb.html index 35ebb95..1a6c2e8 100644 --- a/BibliographicStudies.nb.html +++ b/BibliographicStudies.nb.html @@ -11,7 +11,7 @@ - + Bibliographic Studies @@ -2832,7 +2832,7 @@

Bibliographic Studies

Reproducible Bibliometric Analysis of Pathology Articles Using PubMed, E-direct, WoS, Google Scholar

Serdar Balcı, MD, Pathologist

-

2018-10-16

+

2018-11-13

@@ -2847,7 +2847,7 @@

1 Introduction

If you want to see the code used in the analysis please click the code button on the right upper corner or throughout the page.

I would like to hear your feedback: https://goo.gl/forms/YjGZ5DHgtPlR1RnB3

-

This document will be continiously updated and the last update was on 2018-10-16.

+

This document will be continiously updated and the last update was on 2018-11-13.

@@ -2878,6 +2878,12 @@

2.3 Most Common MeSH Terms and Ke
+ +
+ +
+ +

@@ -2888,12 +2894,12 @@

3 Sources Used For Analysis

4 Feedback

Serdar Balcı, MD, Pathologist would like to hear your feedback: https://goo.gl/forms/YjGZ5DHgtPlR1RnB3

-

This document will be continiously updated and the last update was on 2018-10-16.

+

This document will be continiously updated and the last update was on 2018-11-13.

-
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+
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
diff --git a/PathologyArticlesFromTurkeyComparedtoAllPublishedArticles.Rmd b/PathologyArticlesFromTurkeyComparedtoAllPublishedArticles.Rmd new file mode 100644 index 0000000..7046803 --- /dev/null +++ b/PathologyArticlesFromTurkeyComparedtoAllPublishedArticles.Rmd @@ -0,0 +1,39 @@ +--- +title: "Pathology Articles From Turkey Compared to All Published Articles" +output: html_notebook +--- + +# europepmc + +https://cran.r-project.org/web/packages/europepmc/index.html + +https://cran.r-project.org/web/packages/europepmc/vignettes/evergreenreviewgraphs.html + + +```{r} +library(europepmc) +``` + + +```{r} +articlesPerTotalArticles <- europepmc::epmc_hits_trend(query = "(AFF:'Turkey') AND ((AFF:'pathology') OR (AFF:'Pathology'))", period = 1980:2017) + +articlesPerTotalArticles +``` + + + +A trend graph of articles of #pathologist from #Turkey derived from Europe PMC #RStats #europepmc #evergreenreviewgraph #pathology #research #bibliography + + +```{r} +library(ggplot2) +ggplot(articlesPerTotalArticles, aes(year, query_hits / all_hits)) + + geom_point() + + geom_line() + + xlab("Year published") + + ylab("Proportion of Pathology articles \n from Turkey in Europe PMC") +``` + + + diff --git a/PathologyArticlesFromTurkeyComparedtoAllPublishedArticles.nb.html b/PathologyArticlesFromTurkeyComparedtoAllPublishedArticles.nb.html new file mode 100644 index 0000000..e4fc90c --- /dev/null +++ b/PathologyArticlesFromTurkeyComparedtoAllPublishedArticles.nb.html @@ -0,0 +1,1789 @@ + + + + + + + + + + + + + +Pathology Articles From Turkey Compared to All Published Articles + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + + + + + + +
+

europepmc

+

https://cran.r-project.org/web/packages/europepmc/index.html

+

https://cran.r-project.org/web/packages/europepmc/vignettes/evergreenreviewgraphs.html

+ + + +
library(europepmc)
+ + + + + + +
articlesPerTotalArticles <- europepmc::epmc_hits_trend(query = "(AFF:'Turkey') AND ((AFF:'pathology') OR (AFF:'Pathology'))", period = 1980:2017)
+
+articlesPerTotalArticles
+ + +
+ +
+ + + +

A trend graph of articles of #pathologist from #Turkey derived from Europe PMC #RStats #europepmc #evergreenreviewgraph #pathology #research #bibliography

+ + + +
library(ggplot2)
+ggplot(articlesPerTotalArticles, aes(year, query_hits / all_hits)) + 
+  geom_point() + 
+  geom_line() +
+  xlab("Year published") + 
+  ylab("Proportion of Pathology articles \n from Turkey in Europe PMC")
+ + +

+ + + + +
+ +
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+ + + +
+ + + + + + + + diff --git a/Sources.Rmd b/Sources.Rmd index df63e25..cf1c7e9 100644 --- a/Sources.Rmd +++ b/Sources.Rmd @@ -57,6 +57,13 @@ and [Google Scholar](https://scholar.google.com). + +https://www.scopus.com/sources + + + + + https://dtd.nlm.nih.gov/ncbi/pubmed/out/doc/2018/ diff --git a/crossref.bib b/crossref.bib new file mode 100644 index 0000000..018243d --- /dev/null +++ b/crossref.bib @@ -0,0 +1,26 @@ +@article{Br_ggmann_2016, + doi = {10.1186/s12905-016-0336-0}, + url = {https://doi.org/10.1186%2Fs12905-016-0336-0}, + year = 2016, + month = {sep}, + publisher = {Springer Nature}, + volume = {16}, + number = {1}, + author = {Dörthe Brüggmann and Alexandra Elizabeth-Martinez and Doris Klingelhöfer and David Quarcoo and Jenny M. Jaque and David A. Groneberg}, + title = {Endometriosis and its global research architecture: an in-depth density-equalizing mapping analysis}, + journal = {{BMC} Women{\textquotesingle}s Health} +} + +@article{Br_ggmann_2016, + doi = {10.1186/s12905-016-0336-0}, + url = {https://doi.org/10.1186%2Fs12905-016-0336-0}, + year = 2016, + month = {sep}, + publisher = {Springer Nature}, + volume = {16}, + number = {1}, + author = {Dörthe Brüggmann and Alexandra Elizabeth-Martinez and Doris Klingelhöfer and David Quarcoo and Jenny M. Jaque and David A. Groneberg}, + title = {Endometriosis and its global research architecture: an in-depth density-equalizing mapping analysis}, + journal = {{BMC} Women{\textquotesingle}s Health} +} + diff --git a/endometriosis.Rmd b/endometriosis.Rmd new file mode 100644 index 0000000..a157bbe --- /dev/null +++ b/endometriosis.Rmd @@ -0,0 +1,39 @@ +--- +title: "endometriosis" +output: html_notebook +--- + +```{r} +library(europepmc) +``` + + +```{r} +endometriosis_articlesPerTotalArticles <- europepmc::epmc_hits_trend(query = "endometriosis", period = 1980:2017) + +endometriosis_articlesPerTotalArticles +View(endometriosis_articlesPerTotalArticles) +``` + + +```{r} +library(ggplot2) +ggplot(endometriosis_articlesPerTotalArticles, aes(year, query_hits / all_hits)) + + geom_point() + + geom_line() + + xlab("Year published") + + ylab("Proportion of Endometriois \n articles in Europe PMC") +``` + + + + +https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5031306/ + + +```{r} +knitcitations::citep("10.1186/s12905-016-0336-0") +``` + + + diff --git a/endometriosis.nb.html b/endometriosis.nb.html new file mode 100644 index 0000000..fd0a748 --- /dev/null +++ b/endometriosis.nb.html @@ -0,0 +1,1852 @@ + + + + + + + + + + + + + +endometriosis + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + + + + + + + + + + + +
library(europepmc)
+ + + + + + +
+ +
+ + + + + + +
library(ggplot2)
+ggplot(endometriosis_articlesPerTotalArticles, aes(year, query_hits / all_hits)) + 
+  geom_point() + 
+  geom_line() +
+  xlab("Year published") + 
+  ylab("Proportion of Endometriois \n articles in Europe PMC")
+ + +

+ + + +

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5031306/

+ + + +
knitcitations::citep("10.1186/s12905-016-0336-0")
+ + +
[1] "(Brüggmann, Elizabeth-Martinez, Klingelhöfer, Quarcoo, Jaque, and Groneberg, 2016)"
+ + + + + +
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+ + + +
+ + + + + + + + diff --git a/p values regular expression b/p values regular expression new file mode 100644 index 0000000..79b4496 --- /dev/null +++ b/p values regular expression @@ -0,0 +1,2 @@ +p values in pathology articles +regular expression \ No newline at end of file diff --git a/ulakbim patoloji b/ulakbim patoloji new file mode 100644 index 0000000..36811bc --- /dev/null +++ b/ulakbim patoloji @@ -0,0 +1,2 @@ +ulakbim patoloji +TR dizin \ No newline at end of file